Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1472 ATGGGTAACAATGTTTGTAAGCTTTGTAACCCCATAATAAAACTTATAACAAAGGTTAGAAAAAAGCCTTCAAAATCCTCTACTACTAGTACTATTGTTCCATCCTTCATAGACTTGTTCCAACAAAACTTGTTAGAGTTTAATAATAATGATAACCCTATTGCCGTAAATGACACCCCAGTTTTTATCTGTCAAATTTGCTTTGAATCAAAGCCTCTAAGAGAGTCCTTAAATATTGAAGGTTGCAACCATTTTTACTGCACCAATTGCACTCTTAAATACATAATATCAAAGCTCCAAGACAATGTATTGAACCTTGTGTGTCCTGAACCAAGGTGCATGGGAGTGTTGAATCCTCATTACTGCAAGACATTTCTACCAAACAATGTATCAGTTTGGTGGGAAAATGCTTTAAGTGAATCAGTGATTCCTGAGAATGTTAAGTTCTATTGTCCTTTTCAAGATTGTTCAGCATTGTTAATCAATGATGGTAATGAAGGAGAGGTTATTAGAGACTCAGAATGTCCTCATTGTAAGAGAAACATTTGTGTTCAGTGTAAAGCTCCTTGGCATGCAGATTTGAGTTGTGAAAAGTTTCAAATGATGAAAGGTAAAGAAGATGATTTGATGAAGGATTTAGCTAAGAGAAGAAACTGGAAAAGGTGTCCAAAATGTAAGCATTATGTTGAGAGGAATGGTGGATGTTGTGACATGAGATGCAGGGCTTACCATGATTGA 738 0.355 MGNNVCKLCNPIIKLITKVRKKPSKSSTTSTIVPSFIDLFQQNLLEFNNNDNPIAVNDTPVFICQICFESKPLRESLNIEGCNHFYCTNCTLKYIISKLQDNVLNLVCPEPRCMGVLNPHYCKTFLPNNVSVWWENALSESVIPENVKFYCPFQDCSALLINDGNEGEVIRDSECPHCKRNICVQCKAPWHADLSCEKFQMMKGKEDDLMKDLAKRRNWKRCPKCKHYVERNGGCCDMRCRAYHD 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1472 245 Gene3D - 193 244 - -
Lal17g1472 245 SMART ibrneu5 132 196 IPR002867 -
Lal17g1472 245 ProSiteProfiles Zinc finger RING-type profile. 64 112 IPR001841 -
Lal17g1472 245 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 52 242 IPR031127 GO:0004842|GO:0016567
Lal17g1472 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 143 IPR013083 -
Lal17g1472 245 SUPERFAMILY RING/U-box 205 240 - -
Lal17g1472 245 ProSiteProfiles TRIAD supradomain profile. 60 245 IPR044066 -
Lal17g1472 245 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 52 242 - -
Lal17g1472 245 Pfam IBR domain, a half RING-finger domain 144 196 IPR002867 -
Lal17g1472 245 SUPERFAMILY RING/U-box 59 144 - -
Lal17g1472 245 SUPERFAMILY RING/U-box 148 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1472 Lal-Chr17 16095629 16096420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1472 57 241 C3H Transcription Factor Family AT2G19610 25.641 3.09e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1472 K11975 - rcu:8259039 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1472 17 16095629 16096420 Lal17g1472 17 16095629 16096420 ECH