Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1469 ATGTTGAATTCCCAACGCTTCATACTCTATCTAAAGGGTTTAACCACAATTCTAGTCCCAAACTTAAACCCTAATTTCCCAAACTTTCTTTCAACAAATTCTCATTACTACAGCAAAATCACTTCAAATCAAAACTCATTCACTGTTTCCTACCTCATAAACAATTGTGGGTTTTCTCATGAAACTGCTCTCACTGCTTCCAAGCTAGTCCATTTCCAAACAGCACAAAAACCTGATTCTGTCATCACCTTCTTCAGAAACCACGGTTTCAACAAATCTCAGCTTTACAGTATTATCAGAAAATCACCAAATGTGCTTACTTGTGATCCCCACGAAAGGGTTTTGTCAAAGTTTGAATTTTTATACTCCAAAGGTGCTTCTAGCTCTGACATTGTTCTATTGGTGACTAGGGACACCAGGTTCTTATATACAAGCCTTGAGAATAGCATAATCCCTAGGTATGAATTTTTGAAAAGGTTTTTGAAATGTGATAAGAAAACAGTTAAATGTATAGTTGTTTGTCCTGGTTTACTTGGTAGATTTCTTGTGGAAAAAAATGTTAACTTTTTGCTTGATAATGTTGGAGTGGCTGAGTCACATATTTGCTGCTTGCTTCAATCGAGGCCTTCGATACTCTTGTCGGATTTTAATCAGATGAAGAAGGCAGTAAATGAAGTAAAGGCAATGGGCTTTGATGATCCATCAAAAGTTACCTTTGTTATAGCATTGTTAGCCAGAAGGGCTATGTCGAAATCGCGGTGGGATGCCAAAGTTGAAGTCTTTAAGAGCTGGGGGTGGTCTGAAGAGAACATTCTGGAAGCATTTAGGAAGGAGCCGAAATGTATGTTAGCATCGAAGGATAAGATCGATGAGGTGATGAGACTTTGGGTGAGTCAGTTTGGTTGGAACTCTCTGGCTCTTGTTGATGGACCGGGGATGTTTGGATATAGTTTGGAGAAAAGGATCATTCCAAGGGCTTTCATTGTCCAGTATCTACTCGCGAAAGGTTTGAGAAAGAAGAATGCTAGCTTATTTTCACCATTTGTTTTGTCTGAAAAGTTGTTTATTGAGAAATATGTTGAGTGTTTTGAGGAGGAAAGATCTGAACTATTGAAGTTATACCAGGAAAAAATGAATGTTCAAGATAGCAAGGATGGTGTAACATCTGACATTTTGCCAAAGGTTACATTATGA 1194 0.3802 MLNSQRFILYLKGLTTILVPNLNPNFPNFLSTNSHYYSKITSNQNSFTVSYLINNCGFSHETALTASKLVHFQTAQKPDSVITFFRNHGFNKSQLYSIIRKSPNVLTCDPHERVLSKFEFLYSKGASSSDIVLLVTRDTRFLYTSLENSIIPRYEFLKRFLKCDKKTVKCIVVCPGLLGRFLVEKNVNFLLDNVGVAESHICCLLQSRPSILLSDFNQMKKAVNEVKAMGFDDPSKVTFVIALLARRAMSKSRWDAKVEVFKSWGWSEENILEAFRKEPKCMLASKDKIDEVMRLWVSQFGWNSLALVDGPGMFGYSLEKRIIPRAFIVQYLLAKGLRKKNASLFSPFVLSEKLFIEKYVECFEEERSELLKLYQEKMNVQDSKDGVTSDILPKVTL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1469 397 Pfam mTERF 83 294 IPR003690 GO:0003690|GO:0006355
Lal17g1469 397 Pfam mTERF 250 355 IPR003690 GO:0003690|GO:0006355
Lal17g1469 397 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 24 380 - -
Lal17g1469 397 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Lal17g1469 397 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Lal17g1469 397 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Lal17g1469 397 SMART mt_12 202 232 IPR003690 GO:0003690|GO:0006355
Lal17g1469 397 SMART mt_12 132 164 IPR003690 GO:0003690|GO:0006355
Lal17g1469 397 Gene3D Transcription termination factor 3, mitochondrial 55 182 IPR038538 -
Lal17g1469 397 Gene3D Transcription termination factor 3, mitochondrial 183 373 IPR038538 -
Lal17g1469 397 PANTHER CGI-12 PROTEIN-RELATED 24 380 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1469 Lal-Chr17 16071540 16072733 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lal17g1469 mTERF 4.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1469 K15032 - gmx:102666622 382.104