Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1467 ATGGGATTTAGAAACACTGCTGGCCCAGAAAAACATCAAGCAATAGCTGCTAGAGTGCAAGCAGATCGTACAGTGTTTGTGAATTGTCGTTTTGAGGGTTACCAATACACTTTATACGCCCAAACTCATAGACAATTCTACCGTAGTTGTGTCATTGCTGGCACAATAGATTTTATCTTTGGCGATGCAGCTTCTGTCTTCCAAAATTGCATCATGCAGGTTAGAAAACCGATGGAGAATCAACAGAACACAATCACTGCTCAAGGTAGATATCAACAACAAGAAACAACCGGTTTTGTTCTACAAAAATGTCAGATTAAAGCCGATGACACATTGGTTCCTGAAAAAGATAAAATCAAGAGCTACCTTGGTAGGCCATGGAAGGAATACTCAAGAACCATTGTCATGGAATCAGAAATTGGAGACATAATTCACCCTGATGGATGGTTACCTTGGGCAGGAAATTTTGCACTCAACACATTGTATTATGCTGAATTCAACAACACAGGACCTGGTTCCAACACCAATGCTAGGGTTAATTGGGTTGGTCGTAAAGTCATTAACAAAGATGAAGCTACCAAGTTTACTGTTGGATCTTTCTTGAATGGAACATGGATCAATGGTAGAGGTGTACCTGCTCAGATGGGTTTGTACAATTAA 660 0.4015 MGFRNTAGPEKHQAIAARVQADRTVFVNCRFEGYQYTLYAQTHRQFYRSCVIAGTIDFIFGDAASVFQNCIMQVRKPMENQQNTITAQGRYQQQETTGFVLQKCQIKADDTLVPEKDKIKSYLGRPWKEYSRTIVMESEIGDIIHPDGWLPWAGNFALNTLYYAEFNNTGPGSNTNARVNWVGRKVINKDEATKFTVGSFLNGTWINGRGVPAQMGLYN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1467 219 Gene3D - 1 217 IPR012334 -
Lal17g1467 219 ProSitePatterns Pectinesterase signature 2. 52 61 IPR033131 -
Lal17g1467 219 PANTHER PECTINESTERASE 1 217 - -
Lal17g1467 219 SUPERFAMILY Pectin lyase-like 2 207 IPR011050 -
Lal17g1467 219 Pfam Pectinesterase 1 203 IPR000070 GO:0030599|GO:0042545
Lal17g1467 219 PANTHER PECTINESTERASE 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1467 Lal-Chr17 16038618 16039696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1467 1 219 Carbohydrate Esterase AT2G26450 62.727 2.50e-102 306
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1467 17 16038618 16039696 Lal4g1491 4 19062626 19063327 LSH
Lal14g1622 14 16637449 16639513 Lal17g1467 17 16038618 16039696 PCT
Lal7g1027 7 16426240 16428238 Lal17g1467 17 16038618 16039696 PCT
Lal17g1467 17 16038618 16039696 Lal14g1622 14 16637449 16639513 PCT
Lal17g1467 17 16038618 16039696 Lal7g1027 7 16426240 16428238 PCT