Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1466 ATGGCATTTCAAGATTTCGCGATCTTATCGGAACGGAGAAGGAATGAGAGGAAAGAAAAAGTGAAGAAGAGGGTTATCTTTGGTGTACTTTCATCCATTCTCATTGTATGTGTCATAGGTGCTGCAACATTTGTTCTTGTCAACAAAACTGGCTCTGAAAACAATGTAAACAAAAAACCTACCACAGCATCAACTGATACAAAAGTTGAACATTATTTGAAGAATATAAAAACAATATGTAGCTCAACTGAATACAAAGCTAAATGTGAAGGACCCCTTAGTGAGGAGGTAGAGAAGGATCCAAAGTTGGCACAACCAAAGGAACTTCTCAGATTATCAATGAAACTTGCTGAGGATGAAATTAATAAGGCTTTTAACAAAACAATGTCCATGAAATTTGAATCAGAAATGGACAATGGAGCATATGAAGATTGCAAACAACTTTTTGATGATGCTAGGGCAGAAATAGGGTTTTCTATATCTGAAGTAAGAAAAAATGATTTGAAGAAGCTTTCAACAAGAACACCTGAATTGAACAATTGGCTTAGTGCAGTTATATCTTATCACCAAACATGCATTGATGGGTTTGTTAATGATGAATTGAAGACTGAACTTAAAAAGCTTTTCCAAGATCCACAAGAATTTGTTAGCAATTCCCTTGCGATTGTGAAGGATATGTCTTCTTTCCTATCCACATTAGAACCAAGTGTAACTCGTCACTTGCTATCAGAGAAAATTGATGACTTTCCTTCTTGGATTGGTGATGCAGATAGAAGGATATTGAAGGCAGCAGATGATAAACCTACACCTAATGTTACTGTGGCAAAAGATGGTTCAGGAAACTTCAAAACCATATCTGAGGCTTTGGCCGCTGTGCCACAATCATATACCGGACGCTATGTGGTTTATGTCAAAGAAGGAATATATGATGAGAAAGTGATTGTAACAAAGAGAATGGAAAATTTAACCATTTATGGCGATGGATCACAAAAGAGTATCATCACTGGCAACAAAAATTATGCAGATGGAATGATCAATGGTTATGAAGTAGTAGTGAAAATGATGTTGCCAAGGGTGAGCGTGGGCCGGGTTGGGACGGGTTAA 1104 0.3714 MAFQDFAILSERRRNERKEKVKKRVIFGVLSSILIVCVIGAATFVLVNKTGSENNVNKKPTTASTDTKVEHYLKNIKTICSSTEYKAKCEGPLSEEVEKDPKLAQPKELLRLSMKLAEDEINKAFNKTMSMKFESEMDNGAYEDCKQLFDDARAEIGFSISEVRKNDLKKLSTRTPELNNWLSAVISYHQTCIDGFVNDELKTELKKLFQDPQEFVSNSLAIVKDMSSFLSTLEPSVTRHLLSEKIDDFPSWIGDADRRILKAADDKPTPNVTVAKDGSGNFKTISEALAAVPQSYTGRYVVYVKEGIYDEKVIVTKRMENLTIYGDGSQKSIITGNKNYADGMINGYEVVVKMMLPRVSVGRVGTG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1466 367 SUPERFAMILY Pectin lyase-like 269 344 IPR011050 -
Lal17g1466 367 TIGRFAM PME_inhib: pectinesterase inhibitor domain 70 225 IPR006501 GO:0004857
Lal17g1466 367 Gene3D - 239 356 IPR012334 -
Lal17g1466 367 PANTHER PECTINESTERASE 14 344 - -
Lal17g1466 367 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 227 IPR035513 -
Lal17g1466 367 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 227 IPR035513 -
Lal17g1466 367 CDD PMEI-like_3 78 228 - -
Lal17g1466 367 Pfam Pectinesterase 271 348 IPR000070 GO:0030599|GO:0042545
Lal17g1466 367 PANTHER PECTINESTERASE 14 344 - -
Lal17g1466 367 Coils Coil 107 127 - -
Lal17g1466 367 SMART PMEI_2 71 222 IPR006501 GO:0004857
Lal17g1466 367 Pfam Plant invertase/pectin methylesterase inhibitor 75 222 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1466 Lal-Chr17 16035502 16037545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1466 1 341 Carbohydrate Esterase AT2G26450 40.267 3.69e-85 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1466 - - gmx:100784679 399.823