Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1463 ATGCCTACATTCTTATCCTTCTTTTTGGTGATAGTGTTTCTTGGCCAATGCACCACTACCACAATTGATGTTGCTGTTGGTGCCTATGGTGATGTTGGAGTAGAGTGTTTAATGGTTTCTCCTTCTGAATTTGTTGGTTCATTGAGAACTAGTGTTTATGTTTTAGAAAATATTATATCCAATCTCTCTAATTTCACTTATTATTCTACAAATGGTCTTAGCCAGTGTGAGTCTTCTAATGCCATATCTGATTGCATGGAACTACTTGACTTGTCATCAGATCAACTCAGCCTATCTATATCAGCTATTCAGAGTCCCAAAGGCATGCATAATAGTACTAGAAACTTAAGCTCTGATTTGAGGACATGGCTAAGTGCAGCACTTACAAATATAGACACATGCATGAATGGACTTGAAGAAACTAATGTCAACACTAATGATCTCTTAATATCCACAAAAATAGACAAAGCGAATTCATTAGTAGTGAATCTCCTCTCTAAGGTAAACCCTATTTCAGGTCAAGTTTCAATGCAACATGTCCAATTTCCTTCTTGGGTTGAACCACATGACCAGAATCTTTTACAAACTAGGGAGGTTAGTGTGGATATTGTAGTAGCTGCTGATGGGTCAGGGAACTATTATACTGTGATGGAAGCAGTGAAAGCAGCACCTGAATATAGCATGAAACGCTTTGTGGTGCACATAAAAAGAGGGGTTTATAGAGAAAATGTTGTTATTGGTAAGAGGAAATGGAACCTCGTGATGATTGGAGAGGGTATGGATAACACTATTATCTCTGGTAGCTTGAGTAAAACTGTGAATTTGACAACATATAAGACAGCTACCTTTGCTGCAAATGGAAGAGGGTTCATAGCAAGAGACATTACCTTCATGAACATTGCAGGTCCAGAAAATCATCAAGCAGTAGCATTAAGATCAGATTCAGATCTTTCAGTGTTCTATAGATGTGGCATTTTTGGTTACCAAGATAGCCTCTATGCTCACACAATGCGCCAATTCTATAGAGAATGCAAAATCACTGGCACAGTTGATTTCATATGTGGTAATGCCACTGCTGTGTTTCAAAACTGCCAAATACTTGCAAAGAAAGGGTTACCAAATCAAAAGAACACCATAACAGCTCAAAGTGCAAGATACCCTAATCAACCATCTTGTTTCTCTTTTCAATTCTCAAACATTTCTGCTGATTATGATCTTCTACCATATACTCAATCCATCAAAACTTACCTTGGAAGACCATGGAATGCATATTCCAAAACAGTTTTCATGCAATCCTACATAAGTAATGTGCTTAGTCCAGAAGGGTGGCTAGAGTGGAATGGAAGCAAATATTTGGATACATTATACTATGCTGAGTATAAAAATTATGGACCAGGATCTGCACTAGATAAGAGAGTGAAATGGCTTGGGTATCATGTGTTGAATTATTCTAACGAAGCTAGTAACTTCACAGTTGCACAATTGTTACAAGGGGATATATGGTTGCCTTCAACAGGTGTAAACTTCACTTCTTGGATTTAG 1542 0.3768 MPTFLSFFLVIVFLGQCTTTTIDVAVGAYGDVGVECLMVSPSEFVGSLRTSVYVLENIISNLSNFTYYSTNGLSQCESSNAISDCMELLDLSSDQLSLSISAIQSPKGMHNSTRNLSSDLRTWLSAALTNIDTCMNGLEETNVNTNDLLISTKIDKANSLVVNLLSKVNPISGQVSMQHVQFPSWVEPHDQNLLQTREVSVDIVVAADGSGNYYTVMEAVKAAPEYSMKRFVVHIKRGVYRENVVIGKRKWNLVMIGEGMDNTIISGSLSKTVNLTTYKTATFAANGRGFIARDITFMNIAGPENHQAVALRSDSDLSVFYRCGIFGYQDSLYAHTMRQFYRECKITGTVDFICGNATAVFQNCQILAKKGLPNQKNTITAQSARYPNQPSCFSFQFSNISADYDLLPYTQSIKTYLGRPWNAYSKTVFMQSYISNVLSPEGWLEWNGSKYLDTLYYAEYKNYGPGSALDKRVKWLGYHVLNYSNEASNFTVAQLLQGDIWLPSTGVNFTSWI 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1463 513 Pfam Plant invertase/pectin methylesterase inhibitor 56 158 IPR006501 GO:0004857
Lal17g1463 513 SMART PMEI_2 40 167 IPR006501 GO:0004857
Lal17g1463 513 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 148 IPR006501 GO:0004857
Lal17g1463 513 Pfam Pectinesterase 202 499 IPR000070 GO:0030599|GO:0042545
Lal17g1463 513 ProSitePatterns Pectinesterase signature 1. 227 246 IPR018040 -
Lal17g1463 513 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 38 511 - -
Lal17g1463 513 SUPERFAMILY Pectin lyase-like 200 511 IPR011050 -
Lal17g1463 513 PANTHER PECTINESTERASE 38 511 - -
Lal17g1463 513 CDD PMEI-like_4 3 172 - -
Lal17g1463 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 149 IPR035513 -
Lal17g1463 513 Gene3D - 196 513 IPR012334 -
Lal17g1463 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 172 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1463 Lal-Chr17 16013949 16016973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1463 7 509 Carbohydrate Esterase AT3G43270 54.545 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1463 K01051 - gmx:100801813 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1463 17 16013949 16016973 Lal4g1485 4 18968679 18971798 LSH
Lal7g1026 7 16415355 16421033 Lal17g1463 17 16013949 16016973 PCT
Lal17g1463 17 16013949 16016973 Lal7g1026 7 16415355 16421033 PCT