Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1462 ATGTGTCTTCCATTTGGTGCTAATGCTAGTACTTATAATAATAATACAGTGAGATCAGAGTTTCTTAAAGTTTCTCCTTCTGAATTTGTTGGTTCTGTTAATGAAGTTGTTGATGTTTTGCAAGATGTTACTTCCATTCTCTCTGAGTTTGCCAATGTTTTTGGAGATTTTAGGCTTTCAAATGCAGTTTCTGATTGTCTTGATTTGCTTGATTTGTCTTCTGAACAACTTAGTTGGTCTGTCTCAGCTACTCAGAGTCCTAAAGGCAAGCATAATAGTACTGGGAACCTAAGTTCAGATTTAAGGACATGGCTAAGTGCTTCACTAACAAATCCAGAGACATGCATGGATGGATTTGAAGGTACAAACAACATTGTTAAGGGTCTAGTATCAAATGGTCTTGTCCAAATAATATCATTGGTCCAACAACTTTTAACCCAAGTGAACCCTGTTATGGGTCATTTCCCTTTCACAAATAAGGGTCAATTCCCTGCATGGGTTAAACCAAGGGATAGAAAAAAGTTACTTGAACAAAATGTGGTTATTGTGGATACTATAGTTGCTGCTGATGGAAGTGGAAATTATACTAAGGTTATGGATGCTGTGAAAAAAGCACCTAACTATAGCATGAGAAGGTTTGTGATATATGTGAAGAAGGGTATTTATAATGAGAATGTTGAGATTAAGAAGAAAAAATGGAATCTTATGATTATTGGAGATGGCATGAATGAATCTATGATCACTGGAAATAGAAGTTTCATTGATGGTTGGACAACATTCAGATCAGCTACCTTTGGTAACAACACACTATCCCTACTCTTGTTTTAG 828 0.3587 MCLPFGANASTYNNNTVRSEFLKVSPSEFVGSVNEVVDVLQDVTSILSEFANVFGDFRLSNAVSDCLDLLDLSSEQLSWSVSATQSPKGKHNSTGNLSSDLRTWLSASLTNPETCMDGFEGTNNIVKGLVSNGLVQIISLVQQLLTQVNPVMGHFPFTNKGQFPAWVKPRDRKKLLEQNVVIVDTIVAADGSGNYTKVMDAVKKAPNYSMRRFVIYVKKGIYNENVEIKKKKWNLMIIGDGMNESMITGNRSFIDGWTTFRSATFGNNTLSLLLF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1462 275 Pfam Pectinesterase 184 268 IPR000070 GO:0030599|GO:0042545
Lal17g1462 275 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 140 IPR035513 -
Lal17g1462 275 SMART PMEI_2 12 147 IPR006501 GO:0004857
Lal17g1462 275 Gene3D - 180 272 IPR012334 -
Lal17g1462 275 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 149 IPR035513 -
Lal17g1462 275 CDD PMEI-like_4 13 151 - -
Lal17g1462 275 ProSitePatterns Pectinesterase signature 1. 209 228 IPR018040 -
Lal17g1462 275 PANTHER PECTINESTERASE 23 266 - -
Lal17g1462 275 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 23 266 - -
Lal17g1462 275 Pfam Plant invertase/pectin methylesterase inhibitor 56 132 IPR006501 GO:0004857
Lal17g1462 275 SUPERFAMILY Pectin lyase-like 184 267 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1462 Lal-Chr17 15995531 15999817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1462 17 266 Carbohydrate Esterase AT3G43270 52.075 7.90e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1462 K01051 - gmx:100801813 364.77