Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1460 ATGGATGCTATCATTTTGAAGCCAAAGGTAGAACATGTCACTGAAAATGAACACAAAGTTCAGGTTTTGGGTATAGATTCCATACAATCATCTCCTCTTGCTGTGAAGAATCATGAAGATTTTGTTGATGAAGTTGGTTCCAACATGGAGAAAAACCTAACCCATAACAAGTCAATGCCGGTATCTGGAATGACTGCAGTGATTCCTAGTACAAGTAAGCTTACCATATTCTATAATGGGAGTGTTTGTGTCTATGATGGAATCCCTGCAGAAAAGGTGCATGAAATAATGCTTATTGCTGCTGCCGCCGCCAAGTCTTCTGAAATGAAGAAAATCGGGACACAATTTCCCATCATTTCACCCGTTCCCACAAGGCCTTCTTCTCCACATGAAGCCCTGAACAATGTTGCTCCACCACAGGCATCATGTTTCGCTGCAGAGAAGAGTCCCATATGCAGGCTGCAAGGTGAATTCCCAATCGCACGCAGGCATTCACTTCAAAGGTTTCTGGAGAGGCGCCGAGACAGGCTGGGAAGCAAAGCCCCATATCCTATCTCATCAAAAGGGAATGCGGCCGACAACATGGAGAATAACTTCTGTGCTGACAATGCAACCGATTTGGTTGCGATGAACCGATCGGAGGAGGAATTTCAGCCAACTATCACTGCCTCTTGA 675 0.4504 MDAIILKPKVEHVTENEHKVQVLGIDSIQSSPLAVKNHEDFVDEVGSNMEKNLTHNKSMPVSGMTAVIPSTSKLTIFYNGSVCVYDGIPAEKVHEIMLIAAAAAKSSEMKKIGTQFPIISPVPTRPSSPHEALNNVAPPQASCFAAEKSPICRLQGEFPIARRHSLQRFLERRRDRLGSKAPYPISSKGNAADNMENNFCADNATDLVAMNRSEEEFQPTITAS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1460 224 SMART tify_2 67 102 IPR010399 -
Lal17g1460 224 PANTHER DIVERGENT CCT MOTIF PROTEIN 37 199 - -
Lal17g1460 224 Pfam Jas motif 159 183 IPR018467 -
Lal17g1460 224 Pfam tify domain 69 101 IPR010399 -
Lal17g1460 224 ProSiteProfiles Tify domain profile. 67 102 IPR010399 -
Lal17g1460 224 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 37 199 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1460 Lal-Chr17 15980979 15984402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1460 34 186 Tify Gene Family AT5G20900 41.935 2.82e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lal17g1460 tify 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1460 K13464 - gmx:100306045 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1171 19 15174269 15177450 Lal17g1460 17 15980979 15984402 PCT
Lal17g1460 17 15980979 15984402 Lal19g1171 19 15174269 15177450 PCT