Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1454 ATGGTGATATTAAACCTTGGGTGGAAGAAGGAGAAGGGAAAAGAAGAGAAGAGAATGCAGCTTGGGAAATATGAATTGGGTGAAACACTTGGGCAAGGAAATTTTGGAAAAGTGAAGTTGGCTAAGGACACTTATTCAGGGCAATTTTTTGCTGTGAAGATTCTTGAGAAGAACAAGATTATTGATCTCAATAACACTGATCAGATAAAGAGGGAAATAGCCACCTTGAAGGTTCTTAAGCATCCTAATGTTGTTAGATTATACGAGGTCTTAGCTAGCAAAACCAAAATTTATATGGTACTAGAGTATGTGACTGGAGGAGAATTATTTGACAAAATTCAATCAAAGGGTAAACTTACAGAAGGTGCAGCAAGGAAGATATTTCAACATTTGATTGATGGTGTAAGCTATTGTCACAATAAAGGGGTCTATCATAGGGATCTTAAGCTAGAGAATGTACTTGTGGATGCTAAAGGGAACATAAAGATAACAGATTTTAATCTCAGTGCCTTACCCCAGAACTTTAGGGCTGATGGGTTGTTGCATACAACATGTGGAAGTCCTAACTATGTTGCACCTGAGATTCTTGCCAATCGAGGCTATGACGGCGCGACATCGGACACATGGTCTTGTGGTGTTATCTTGTATGTAATTATCACAGGATACCTTCCTTTTGATGACAGAAATCTTGCAGTTCTATATCAGAAGATTTTTAAAGGAGATGTTCAAATACCAAAATGGCTTTCACCTGGTGCCCAAAACATGCTAAAGAGGATTCTTGATCCGAATCCGAAAACCCGAATAACAATGGCTATGATCAAAGAAGATGAATGGTTCAAGAAGGGTTATACTCCAGTAAACCCAGAGGATGAAGAAGAAGATGTACATATTGATGATGAAGCCCTTTCAATCCATGAAGTGGCACTTGAAGCAGAACAAAAGAGTCCAAAATCACCAAATCTTATCAATGCATTTCAGTTGATAGGAATGTCTTCATGCCTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTTTCTGAAAGGAAGATAAGATTTACATCCCACCATTCACCAAAAGATTTGATTGAGAAGATTGAAGACATTGTAACAGAAATGGGATTTATAGTCCAGAAGAGAAATGGAATGTTGAAAGTGACACAAGAGAACAAAAAACAGAAAAGTCTATGTAGTCTCTCAGCGGCGGCCGAGGTGTTTGAAATAAGCACATCATTGTATGTAGTAGAACTAAGGAAGTCTTATGGAGATCCTATAGTATATAGAAAGCTATGCAAAAAGTTATCAAATGATTTGGGTGTTCCACCAATGCAAGTAGGGAGCTCAGAAATGATTGGATTAAAAGAAGAAAAATTAGAAGTGAGATAA 1383 0.3774 MVILNLGWKKEKGKEEKRMQLGKYELGETLGQGNFGKVKLAKDTYSGQFFAVKILEKNKIIDLNNTDQIKREIATLKVLKHPNVVRLYEVLASKTKIYMVLEYVTGGELFDKIQSKGKLTEGAARKIFQHLIDGVSYCHNKGVYHRDLKLENVLVDAKGNIKITDFNLSALPQNFRADGLLHTTCGSPNYVAPEILANRGYDGATSDTWSCGVILYVIITGYLPFDDRNLAVLYQKIFKGDVQIPKWLSPGAQNMLKRILDPNPKTRITMAMIKEDEWFKKGYTPVNPEDEEEDVHIDDEALSIHEVALEAEQKSPKSPNLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSHHSPKDLIEKIEDIVTEMGFIVQKRNGMLKVTQENKKQKSLCSLSAAAEVFEISTSLYVVELRKSYGDPIVYRKLCKKLSNDLGVPPMQVGSSEMIGLKEEKLEVR 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1454 460 CDD CIPK_C 323 434 - -
Lal17g1454 460 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1454 460 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1454 460 Gene3D Kinase associated domain 1, KA1 317 439 - -
Lal17g1454 460 SUPERFAMILY Protein kinase-like (PK-like) 21 309 IPR011009 -
Lal17g1454 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Lal17g1454 460 ProSiteProfiles NAF domain profile. 317 341 IPR018451 GO:0007165
Lal17g1454 460 PANTHER - 12 443 - -
Lal17g1454 460 Pfam NAF domain 319 378 IPR004041 GO:0007165
Lal17g1454 460 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Lal17g1454 460 PANTHER CBL-INTERACTING PROTEIN KINASE 21 12 443 - -
Lal17g1454 460 Gene3D Transferase(Phosphotransferase) domain 1 104 285 - -
Lal17g1454 460 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1454 460 Gene3D Phosphorylase Kinase; domain 1 8 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1454 Lal-Chr17 15923629 15932121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1454 87 438 CBL-interacting serine-threonine protein kinases AT3G17510 70.538 1.32e-172 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal17g1454 Pkinase 2.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1454 K07198 - gmx:100815660 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1454 17 15923629 15932121 Lal4g1455 4 18725801 18733040 LSH
Lal14g1610 14 16551489 16556892 Lal17g1454 17 15923629 15932121 PCT
Lal7g1009 7 16309823 16315146 Lal17g1454 17 15923629 15932121 PCT
Lal19g1157 19 15089175 15094721 Lal17g1454 17 15923629 15932121 PCT
Lal17g1454 17 15923629 15932121 Lal14g1610 14 16551489 16556892 PCT
Lal17g1454 17 15923629 15932121 Lal7g1009 7 16309823 16315146 PCT
Lal17g1454 17 15923629 15932121 Lal19g1157 19 15089175 15094721 PCT