Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1450 ATGATTTTGGGTTTTGCAGAAACAGGTATATTTGACAGCAGCAAAATGGCGTCTGATCTTAACTCGGGGTTGTCCAAGAAAACATGTGTTTTCGGATTGAAAGTGTGGGTATTATTGGGAATAATAGTTGGCTTGTTCATTACAATAATTCTTGTCGTGCTAACGATATGTCTCACTTTAAGGAAGAAATCCAGAACAGTCAATGGCAAGCTTCCCCTTAGCCGTCCTTTATCCGTTTCAGAAGAGATCAAAGAAATTAGAGTTGATCGAGTTTCAGCAAATAATCTTCCACAGAATGGTGCTTTCATGAGTCTGAGTGAAAAATATATTGATAGGGAGTCTGAACAGGTTTCAATCCAAACAAATAATGGGGATAATACTAGTCAATCAGGCTCCTTTAGTCATTTAGAAAACGATGTTAATGGCTCACAATCAGGTGAAGAAAGCAGTGTTAAGAATATTTCATACAGGTCTTCTTCGCATTCTATAACTGCACCATCCCCTTTGTGTGGTTTGCCCGAATTCTCTCACCTTGGCTGGGGGCAGTGGTTTACATTAAGGGACCTAGAACTTGCAACAAATAGATTTTCAAAAGACAATGTTATTGGTGAAGGTGGATATGGAATTGTTTACCGAGGCCAGTTAATCAATGGAAATATTGTGGCCATTAAGAAGCTCCTCAACAATATAGGACAAGCTGAAAAGGAATTTAAGGTGGAAGTTGAGGCTATAGGTCATGTGCGACATAAGAACTTGGTTCGACTCTTGGGCTATTGCATTGAAGGCACTCACCGGTTGCTCGTTTATGAGTATGTTAACAATGGCAACTTAGAGCAATGGCTTCATGGAGCCATGCGACAACATGGTTTTCTTACTTGGGATGCTAGGATGAAAGTTCTCCGTGGAACAGCCAAAGCGTTGGCTTACTTGCATGAGGCAATTGAGCCAAAAGTTGTGCATAGAGATATTAAGTCCAGCAATATTCTAATTGATGAGGACTTTAATGCCAAAATATCTGACTTTGGTCTTGCTAAGTTACTAGGTGCTGGAAAAAGTCATGTTACAACTAGAGTAATGGGTACTTTTGGATATGTAGCTCCTGAGTATGCCAATTCTGGCTTGCTGAACGAGAAGAGTGATGTTTATAGCTTTGGGGTATTGCTTCTTGAAGCAATTACAGGAAGAGACCCAGTGGATTATAGCCGACCTGCAACGGAGGTAAATTTGGTCGACTGGCTCAAAATGATGGTAGGGAGTAGGCGCTCGGAAGAGGTGGTGGACCCTAACATTGAGAGTAGGCCATCAACAAGTGCCCTTAAACGAGCTCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAAAAAAGACCAAAGATGAGTCAAGTTGTGCGCATGCTTGAGTCAGAGGAATATCCTATACCTCGAGAGGATCGGAGACGCAAAAGGAGTCAGGCAGGAAACATGGATGTGGAGGTTCAGAAGGAGACTTCTAATAGAGATAAGAGTGACAATCCAGATTATAAGCCCAATTCCAGAAGGAACTAA 1548 0.4154 MILGFAETGIFDSSKMASDLNSGLSKKTCVFGLKVWVLLGIIVGLFITIILVVLTICLTLRKKSRTVNGKLPLSRPLSVSEEIKEIRVDRVSANNLPQNGAFMSLSEKYIDRESEQVSIQTNNGDNTSQSGSFSHLENDVNGSQSGEESSVKNISYRSSSHSITAPSPLCGLPEFSHLGWGQWFTLRDLELATNRFSKDNVIGEGGYGIVYRGQLINGNIVAIKKLLNNIGQAEKEFKVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQHGFLTWDARMKVLRGTAKALAYLHEAIEPKVVHRDIKSSNILIDEDFNAKISDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPATEVNLVDWLKMMVGSRRSEEVVDPNIESRPSTSALKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRKRSQAGNMDVEVQKETSNRDKSDNPDYKPNSRRN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1450 515 ProSitePatterns Protein kinases ATP-binding region signature. 202 225 IPR017441 GO:0005524
Lal17g1450 515 PANTHER OS01G0323000 PROTEIN 17 515 - -
Lal17g1450 515 SUPERFAMILY Protein kinase-like (PK-like) 180 474 IPR011009 -
Lal17g1450 515 PANTHER RECEPTOR-LIKE KINASE PLANT 17 515 - -
Lal17g1450 515 SMART serkin_6 196 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1450 515 Pfam Protein kinase domain 197 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1450 515 CDD STKc_IRAK 202 468 - -
Lal17g1450 515 MobiDBLite consensus disorder prediction 116 153 - -
Lal17g1450 515 ProSiteProfiles Protein kinase domain profile. 196 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1450 515 MobiDBLite consensus disorder prediction 467 515 - -
Lal17g1450 515 Gene3D Phosphorylase Kinase; domain 1 177 271 - -
Lal17g1450 515 Gene3D Transferase(Phosphotransferase) domain 1 272 484 - -
Lal17g1450 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1450 Lal-Chr17 15899194 15903762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1450 173 470 Trihelix Transcription Factor Family AT1G70460 50.495 1.52e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lal17g1450 Pkinase 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1450 - - lang:109328693 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1606 14 16515411 16524143 Lal17g1450 17 15899194 15903762 PCT
Lal7g1008 7 16300919 16306375 Lal17g1450 17 15899194 15903762 PCT
Lal19g1156 19 15078970 15082595 Lal17g1450 17 15899194 15903762 PCT
Lal17g1450 17 15899194 15903762 Lal14g1606 14 16515411 16524143 PCT
Lal17g1450 17 15899194 15903762 Lal7g1008 7 16300919 16306375 PCT
Lal17g1450 17 15899194 15903762 Lal19g1156 19 15078970 15082595 PCT