Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1449 ATGAAGGCTGTTGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACTGCTAAGCAACTGAATTCAGTGCCTTCAGATTGTAGGAGTCAAAAGTTGTTCCCAGGTGATTCTGAAATTCCTGCAAAATTTGGTGATAGTTCTAACAACTTATCTTCTGGTTGGAATGGTATCTACCCTGTGGAAACAAATAGAGAATTGGAGAAGAGGAAGAGTGGTGGTGATGTTGTTACTGAAGGGGTGGAGATGAATGATGATGGTGGTTCCCTTAATTTGAACCTTGGGGCTCAAGTATACCCGATAATTGAAGGAGAGGAAACAAGTGGAAAGAAGACAAGGATAACTGGGGCTACTTCGGCTTCGAATCGGGCTGTTTGTCAAGTTGAAGATTGCAGGGCTGATCTTAGTAATGCAAAGGACTACCACCGTCGCCACAAAGTTTGTGATGTGCATTCTAAGGCCAGCAAGGCACTGGTTGGAAATGTGATGCAGCGGTTCTGTCAACAGTGTAGCAGGTTTCATATTCTTCAAGAGTTTGATGAAGGTAAGAGAAGTTGCCGTAGGCGTCTAGCAGGCCACAATAAGAGGAGGAGGAAAACGCATCCTGATCCCACTGTAGCCAATGGGGGCTCACTAAATGATGAAAGGGGTAGTGGCTATCTGTTGACGAGTCTGCTGAGGATACTGTCCAATATGCATTGTGAGTTTTTGTGTCATCAGAAGTTTATCTAA 753 0.4409 MKAVGKRSLEWDLNDWKWDGDLFTAKQLNSVPSDCRSQKLFPGDSEIPAKFGDSSNNLSSGWNGIYPVETNRELEKRKSGGDVVTEGVEMNDDGGSLNLNLGAQVYPIIEGEETSGKKTRITGATSASNRAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTHPDPTVANGGSLNDERGSGYLLTSLLRILSNMHCEFLCHQKFI 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1449 250 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 4 242 IPR044817 GO:0003677
Lal17g1449 250 MobiDBLite consensus disorder prediction 197 219 - -
Lal17g1449 250 SUPERFAMILY SBT domain 131 211 IPR036893 GO:0003677|GO:0005634
Lal17g1449 250 Gene3D - 123 194 IPR036893 GO:0003677|GO:0005634
Lal17g1449 250 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 4 242 - -
Lal17g1449 250 ProSiteProfiles Zinc finger SBP-type profile. 130 207 IPR004333 GO:0003677
Lal17g1449 250 Pfam SBP domain 133 206 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1449 Lal-Chr17 15888645 15896743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1449 5 240 SBP-box Gene Family AT3G60030 52.893 5.10e-68 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal17g1449 SBP 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1449 - - gmx:100792774 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1449 17 15888645 15896743 Lal4g1451 4 18665307 18675811 LSH
Lal19g1153 19 15057287 15066641 Lal17g1449 17 15888645 15896743 PCT
Lal17g1449 17 15888645 15896743 Lal19g1153 19 15057287 15066641 PCT