Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal17g1432 | ATGCAGAGCCAAGTTGTGTGTAATGGATGCAGGAACATTTTGCTTTATCCTAGAGAGGCAACCAATGTTTGCTGTGCATTATGCAACACAATTATATCTGTTCCTCCACCTGGTATATGCTCCGGGATGGAAATGTCACAACTTTACTGTGGAGGCTGCAGGACCTTGCTAATGTACGCACGTGGAGCTACAAGTGTAAGATGTTCCTGCTGTCACACTGTAAACCTTGTACCAGCGTCTAATCAAGTCAGCCATATCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCATCGGTCAAATGTGCGCTTTGTCACCATATCACCAATGTCAGTACTACCAATGGAAGGCTTCCAAGTCCTGGTCAAAGACCTAACGAAACAACCAACCCAGGAACGGTATCTTCTACTCCAACATCAATGCCCCACTCTCAAAGCCAAACTGTTGTAGTAGAAAATCCTATGTCTGTTGATTCTAGTGGGAAACTGGTGAGCAATGTCGTCGTCGGTGTTACAACAGAAAAGAAGTGA | 543 | 0.453 | MQSQVVCNGCRNILLYPREATNVCCALCNTIISVPPPGICSGMEMSQLYCGGCRTLLMYARGATSVRCSCCHTVNLVPASNQVSHIHCGNCRTTLMYPYGAPSVKCALCHHITNVSTTNGRLPSPGQRPNETTNPGTVSSTPTSMPHSQSQTVVVENPMSVDSSGKLVSNVVVGVTTEKK | 180 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal17g1432 | 180 | Pfam | LSD1 zinc finger | 88 | 112 | IPR005735 | - | |
Lal17g1432 | 180 | Pfam | LSD1 zinc finger | 50 | 74 | IPR005735 | - | |
Lal17g1432 | 180 | Pfam | LSD1 zinc finger | 7 | 31 | IPR005735 | - | |
Lal17g1432 | 180 | MobiDBLite | consensus disorder prediction | 118 | 153 | - | - | |
Lal17g1432 | 180 | PANTHER | PROTEIN LSD1 | 1 | 180 | - | - | |
Lal17g1432 | 180 | PANTHER | PROTEIN LSD1 | 1 | 180 | IPR040319 | - | |
Lal17g1432 | 180 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 47 | 77 | IPR005735 | - | |
Lal17g1432 | 180 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 85 | 115 | IPR005735 | - | |
Lal17g1432 | 180 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 4 | 31 | IPR005735 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal17g1432 | Lal-Chr17 | 15816914 | 15821224 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-LSD | Lal17g1432 | zf-LSD1 | 9.5e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal17g1432 | - | - | gmx:100776394 | 321.627 |