Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1432 ATGCAGAGCCAAGTTGTGTGTAATGGATGCAGGAACATTTTGCTTTATCCTAGAGAGGCAACCAATGTTTGCTGTGCATTATGCAACACAATTATATCTGTTCCTCCACCTGGTATATGCTCCGGGATGGAAATGTCACAACTTTACTGTGGAGGCTGCAGGACCTTGCTAATGTACGCACGTGGAGCTACAAGTGTAAGATGTTCCTGCTGTCACACTGTAAACCTTGTACCAGCGTCTAATCAAGTCAGCCATATCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCATCGGTCAAATGTGCGCTTTGTCACCATATCACCAATGTCAGTACTACCAATGGAAGGCTTCCAAGTCCTGGTCAAAGACCTAACGAAACAACCAACCCAGGAACGGTATCTTCTACTCCAACATCAATGCCCCACTCTCAAAGCCAAACTGTTGTAGTAGAAAATCCTATGTCTGTTGATTCTAGTGGGAAACTGGTGAGCAATGTCGTCGTCGGTGTTACAACAGAAAAGAAGTGA 543 0.453 MQSQVVCNGCRNILLYPREATNVCCALCNTIISVPPPGICSGMEMSQLYCGGCRTLLMYARGATSVRCSCCHTVNLVPASNQVSHIHCGNCRTTLMYPYGAPSVKCALCHHITNVSTTNGRLPSPGQRPNETTNPGTVSSTPTSMPHSQSQTVVVENPMSVDSSGKLVSNVVVGVTTEKK 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1432 180 Pfam LSD1 zinc finger 88 112 IPR005735 -
Lal17g1432 180 Pfam LSD1 zinc finger 50 74 IPR005735 -
Lal17g1432 180 Pfam LSD1 zinc finger 7 31 IPR005735 -
Lal17g1432 180 MobiDBLite consensus disorder prediction 118 153 - -
Lal17g1432 180 PANTHER PROTEIN LSD1 1 180 - -
Lal17g1432 180 PANTHER PROTEIN LSD1 1 180 IPR040319 -
Lal17g1432 180 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 47 77 IPR005735 -
Lal17g1432 180 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 85 115 IPR005735 -
Lal17g1432 180 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 31 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1432 Lal-Chr17 15816914 15821224 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lal17g1432 zf-LSD1 9.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1432 - - gmx:100776394 321.627