Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1422 ATGGGTCGTTCAAGATTAACCTTGAAGCGCATAGAAAATGATGCATGTCGGAAATCAACCTTCAAGCAAAGAAGGGATGTACTTCTGAATAAAATGAAAGAGCTTTCCAATTTATGTAACGCTGAAGAAGGTGAAGCTGCAAACGCTTGTTTGATAGTTTACGATACGAATGGTGGTGAACCTCAACCTATGACTTGGCCTGAAAACCTTAAGCCGGAACACTCCCTCATTCAAAGGTTTGAGAATGAAAAGAATAAGGAATCTCCGATTATGTTCGGTATCCAAGACTATTTCAAGAATAAGAAAGACAAGGTTGAGGCTGATATTTCCAAAGTGAAAAAAGAAATCGTGAAGATTCAGTATCCAACTAGCCACCCATGTTTTAATAATCTCGGAGATGAGCAGATTAGAAATTTCCTTGCTGTGTTGGATGCTAAGGGTAAAGCCTGCATTGAAAGAATGAACCTGTTGAGATTGCAGCAACAAGTTGAACTCAACTCGACTCAAACGAGTAGTGCTGCCTTAAACTCAAGTGAAGTCAATTTCATGCAGAACAATTTTCAAACCCAACTTATCCCTACTCCTTTGGAGCCATTTGATGATAGTAACAACACCTCGCTTAAGCATGATATCGATTTGCAATCTCAAATGTTTCATATTGATCCAAATCCTATGCAGTTGATAGCAAACAATAATGGGTTGATGGATTCTGCAAATCAAATTGGTGTGCCCTTGGATTGTGCTACACAAGTGAGCCCTCTTAATCATGTCGGCGTTCCCATGGATATTACTAAACAAACCGACCCTGCTGCAGTTTCTACAAATCAACTTGATGATGTGGATTGGGGTAGTCTAATTGACGGACTTATCGATTGTGATACTCTACCTTATGAGTCTGTTTTTCATGACAATTTTTCTGGGTATCAGAATGTGCAACAAGGAGCAGCTTTCGATAACTTGACACCACCGGTGGATGAATTTCAGATAAGTGACTACAACACTATGCTTCAAGCAGAGTTATTCAAGCACATTAATCAAGAGAAGTAA 1047 0.3935 MGRSRLTLKRIENDACRKSTFKQRRDVLLNKMKELSNLCNAEEGEAANACLIVYDTNGGEPQPMTWPENLKPEHSLIQRFENEKNKESPIMFGIQDYFKNKKDKVEADISKVKKEIVKIQYPTSHPCFNNLGDEQIRNFLAVLDAKGKACIERMNLLRLQQQVELNSTQTSSAALNSSEVNFMQNNFQTQLIPTPLEPFDDSNNTSLKHDIDLQSQMFHIDPNPMQLIANNNGLMDSANQIGVPLDCATQVSPLNHVGVPMDITKQTDPAAVSTNQLDDVDWGSLIDGLIDCDTLPYESVFHDNFSGYQNVQQGAAFDNLTPPVDEFQISDYNTMLQAELFKHINQEK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1422 348 ProSiteProfiles MADS-box domain profile. 1 42 IPR002100 GO:0003677|GO:0046983
Lal17g1422 348 Coils Coil 25 45 - -
Lal17g1422 348 PANTHER PROTEIN, PUTATIVE-RELATED 4 262 - -
Lal17g1422 348 SUPERFAMILY SRF-like 1 66 IPR036879 GO:0003677|GO:0046983
Lal17g1422 348 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal17g1422 348 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal17g1422 348 Gene3D - 14 105 IPR036879 GO:0003677|GO:0046983
Lal17g1422 348 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Lal17g1422 348 PANTHER MADS BOX PROTEIN 4 262 - -
Lal17g1422 348 SMART madsneu2 1 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1422 Lal-Chr17 15687098 15688144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1422 1 123 Type I MADS-box Gene Family AT5G55690 25.197 3.56e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal17g1422 SRF-TF 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1422 - - lang:109327505 478.404