Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1409 ATGGTGGGAATGAGGAAAAATCCTAGAGTTGGTGGCGGTGTCGGTGGAACTAATACAGTTACCAAGTACCCAACCCAACACTCACCAAGAAATGGTTGCAGAAGATGGCGCGTGTGGTCACGCGCCACCATGTCCGGGATTTATCAGTCTTCAGATTCTCGCTTGAGAGAGGTATTCTCGCCTGGGCGAGGAAGGCTCACCTGGGAGGGTGAAATCCTGGGCTATACTGGAGGATTCTCGCCTGAGCGAGGGTTGGCTCGCCTAGGCGAGAAAAATGATGTTTTGGACCTGTCGAGACTATTGGGTGTGATGAGGGAGATAATAATGGGTCGTTCAAGATTAACCTTGAAGCGCATAGAAAATGATGCATGCCGGAAATCAACCTTCAAGCAAAGAAGGGATGTACTTCTGAATAAAATGAAAGAACTTTCCAATTTCTGTAATGCTGAAGAAGGTGAAGCTGCCAATGCTTGTTTGATAGTTTATGATACGATTGGTGGTAATCCTCAACCAGTGACATGGCCTAGAAACCTTAACGTGGAGCACTCCCTCATTCAATGGTTTGAGAGTGAAAAGAATGAAGAAGCTCCGATTATGTTCGGTATCCAAGACTACTTCAAGAATAAGACAGACAAGGTTGAGGCTGATATTTCCAAAGTGAGGAAAGAAATCGTGAAAATTCAGTATCCAACTAGCCATCCATGTTTTAATAATCTCGGAGATGAGCAGATTAGGAATTTCCTTGCTGTGTTGGATGCTAAGGGTAGAGCCTGCACTGAAAGAATGAACATCTTGAGATTGCAACAACAAGTTCAAGTCAACTCGTCTCAACCGGTCTTGGATATGGATTCTCAATCTCAGATGCTTCACTTTGATCCAAATCCTATGCAGTTGATGGCAAACAATAATGGGATGATGGATTCTGCTAATGAAATTGGTTTGCCCTTGGATTGTGCTACACAAGTTGGCTCTCCGAATCATGTTGGTATTCCCTTCGATCTTACTATACAAAGTGATCCTGCTGTAGTTTCTGCAAATCAACTTGATGAGAATGTGCAACAAGGAGCAGCTTTCCATACCTTGACACCACCGGTGGATGAACTTCAAATACCTGACTACAATAATATGGTTCAATCAGATTTATTCAACCACATGAATCAAGAGAAGTAA 1170 0.4333 MVGMRKNPRVGGGVGGTNTVTKYPTQHSPRNGCRRWRVWSRATMSGIYQSSDSRLREVFSPGRGRLTWEGEILGYTGGFSPERGLARLGEKNDVLDLSRLLGVMREIIMGRSRLTLKRIENDACRKSTFKQRRDVLLNKMKELSNFCNAEEGEAANACLIVYDTIGGNPQPVTWPRNLNVEHSLIQWFESEKNEEAPIMFGIQDYFKNKTDKVEADISKVRKEIVKIQYPTSHPCFNNLGDEQIRNFLAVLDAKGRACTERMNILRLQQQVQVNSSQPVLDMDSQSQMLHFDPNPMQLMANNNGMMDSANEIGLPLDCATQVGSPNHVGIPFDLTIQSDPAVVSANQLDENVQQGAAFHTLTPPVDELQIPDYNNMVQSDLFNHMNQEK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1409 389 PANTHER MADS BOX PROTEIN 112 270 - -
Lal17g1409 389 PANTHER MADS BOX PROTEIN 269 330 - -
Lal17g1409 389 SUPERFAMILY SRF-like 109 168 IPR036879 GO:0003677|GO:0046983
Lal17g1409 389 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 118 150 IPR002100 GO:0003677|GO:0046983
Lal17g1409 389 PANTHER PROTEIN, PUTATIVE-RELATED 269 330 - -
Lal17g1409 389 PANTHER PROTEIN, PUTATIVE-RELATED 112 270 - -
Lal17g1409 389 SMART madsneu2 109 174 IPR002100 GO:0003677|GO:0046983
Lal17g1409 389 MobiDBLite consensus disorder prediction 1 29 - -
Lal17g1409 389 ProSiteProfiles MADS-box domain profile. 109 150 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1409 Lal-Chr17 15592424 15597470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1409 111 223 Type I MADS-box Gene Family AT1G31630 25.664 1.79e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal17g1409 SRF-TF 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1409 - - lang:109327505 357.451