Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1408 ATGATTGAAGCCAAATTTCTCTCTCTTTGGAACCTTGTGGGCAATGGTGGGATTAGGGCGAGGCAGGGGTTGGAGGCAGAGAACGGTGATACAATGAAGAAGTCTTTGGATCCTTCATCTTTGGTGAACTTGAATGACACGGAAAACAGTTATCAATCAATTGATGACATCGCATCTGGCTTTAAAAAGCTCCATCAAGATGTTGAGGACAATGATTCACCTGGAGATGTTGATAGTCATGCAATTGGAACCATGCTTCCTGATGATGAGGAGGAACTTTTAGCTGGTATAATGGATGATTTTGACCTAAGTGGTTTACCGTGTTCCCTTGAGGACTTGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGCATGGAGCTAGAAACTGATCCACATGATAGTCTCAGTGTGGGTATGTCTAAGTTAAGCTTCTCTGATAGCACTGCTGGCACTGGTTTGCCCCTTTATTCTATTCCTAATGGTGTGGGAGCTGTTGCTGGAGAACATCCATTGGGAGAGCATCCTTCCCGAACATTATTTATTCGAAATATTAACAGTAATGTGGAGGACTCTGAGCTGAAAGCTCTTTTTGAGCAATATGGTCATATTAGAACCCTCTATACTGCTTGTAAACATCGGGGGTTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCCATGCGTGCATTACAAAACAAACCTCTTCGGCGCAGGAAACTTGACATTCACTTCTCAATACCAAAGGACAATCCATCAGACAAGGATATCAACCAAGGGACCTTGGTGGTTTTCAATTTGGATCCTTCTGTTTCAAATGAAGATCTCCATCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATATTATGATGTCAGAGCTGCAGAAGCAGCACTTAAGTTGTTGAATAGGAGTGACATAGCTGGTAAACGCATAAAGCTGGAGCCTAGTCGTCCTGGAGGAGCTCGTCGAACTTTGATGCTCCAACTTAATCAAGAGCTTGATCAAGATGAATATCGGAGTTTCCGATATCAAGTGGGTTCTCCTGTGGCAAACTCTCCACCAAGTAATTGGTTGCAGTTTAGCAGTCCTGTCGAGCAGAATTCAATGCAAACTATGAATCATTCTCCTGGTTCAAGGATCATAAGCCCAACAACAGGCAATCATTTACCAGGATTAGCTTCAATTTTGCAACCTCAGGTATCAAACAATGTGAAGGGTGCAGCTATTGGCAAGGACTTGAGAACTAGTAGTCATGGAGAGAGCACATTTACCAGTATGAATTCAACACATGGTACTTCTTTTCAGTCGCATTCACTTCCAGAGCCAAAGTTCAGACACCATTTTGGACCTTTATCCTCTTTTGGTCAATCAACATCAAATGGATTGTCAATTGAAACCTTGTCTGGGCCACAGTTTCTATGGGGAAGTCCAACCCTCTACTCCGAGCATAACAAACCTTCAGCTTGGCCAAGACCATCTATGGGGCATCCATTTACATCGAATGGAAAGAGCCATGCCTCCCCATACTCAAGTCAGAATAATTCCTTTGTTGGTTCATCCCAGCATCATAACCATCATCATGTTGGCTCTGCTCCGTCAGGTTTGCCTTTTGAAAGACAATTCGGTTTCCATCCCGAGTCACCTGAAATTTCATTCATGAATAATGTCGGTTATGGAGGCATGGGTCTGGGTCACAATGATGGAAATTACATGGTTAATGTGGCTGGGTCTGTTAATGCTGGCATTAATGTACCAAGAAATATGCCTGATAATGGTTCATCGAACTTTAGGATGAGATCTTCTCCTAGGCTTAACCCTGTGTTTTTGGGTAGTGGTCCTTACCCAGGACTGCTGCCTAATACTATGGATAGTTTGACTGACCGTGCTCATAGTAGATGGATAGAGAACAAAGGAAGCCAATTTGATAGCAAGAAGCAATTTCAGCTTGACTTGGAGAAGATTAAAAATGGTGAAGATACAAGGACCACATTAATGATAAAGAATATCCCTAATAAATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAAGGGTACCTATGATTTTCTATATCTGCCAATTGACTTCAAGAACAAATGCAACGTGGGTTATGCATTTATCAACATGCTTTCACCTTTGCTTATTGTTCCATTCTATGAGACATTGAATGGGAAGAGATGGGAGAAGTTTAACAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAATGAGTGCCCTTGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGCCCTATTCTCTTCCACGCAGAGGGTCATGAAGCTGGTGATCAGATCAATCAAGAGCATCTTGCCTCCAACAATGTAAATGTTCATGCACATAGGCTAAGTGAGTTACATTCAACTGATTTTCTGGGCACACCTCGGAATGATGGTCTTCCTGTGAGTTTGGAGACATATTAA 2529 0.4207 MIEAKFLSLWNLVGNGGIRARQGLEAENGDTMKKSLDPSSLVNLNDTENSYQSIDDIASGFKKLHQDVEDNDSPGDVDSHAIGTMLPDDEEELLAGIMDDFDLSGLPCSLEDLEEYDLFGSGGGMELETDPHDSLSVGMSKLSFSDSTAGTGLPLYSIPNGVGAVAGEHPLGEHPSRTLFIRNINSNVEDSELKALFEQYGHIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLHQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKLLNRSDIAGKRIKLEPSRPGGARRTLMLQLNQELDQDEYRSFRYQVGSPVANSPPSNWLQFSSPVEQNSMQTMNHSPGSRIISPTTGNHLPGLASILQPQVSNNVKGAAIGKDLRTSSHGESTFTSMNSTHGTSFQSHSLPEPKFRHHFGPLSSFGQSTSNGLSIETLSGPQFLWGSPTLYSEHNKPSAWPRPSMGHPFTSNGKSHASPYSSQNNSFVGSSQHHNHHHVGSAPSGLPFERQFGFHPESPEISFMNNVGYGGMGLGHNDGNYMVNVAGSVNAGINVPRNMPDNGSSNFRMRSSPRLNPVFLGSGPYPGLLPNTMDSLTDRAHSRWIENKGSQFDSKKQFQLDLEKIKNGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLLIVPFYETLNGKRWEKFNSEKVASLAYARIQGMSALVSHFQNSSLMNEDKRCRPILFHAEGHEAGDQINQEHLASNNVNVHAHRLSELHSTDFLGTPRNDGLPVSLETY 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1408 842 Gene3D - 261 358 IPR012677 -
Lal17g1408 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 243 IPR000504 GO:0003723
Lal17g1408 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 329 IPR000504 GO:0003723
Lal17g1408 842 CDD RRM2_MEI2_like 261 331 - -
Lal17g1408 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 335 IPR000504 GO:0003723
Lal17g1408 842 SUPERFAMILY RNA-binding domain, RBD 174 337 IPR035979 GO:0003676
Lal17g1408 842 MobiDBLite consensus disorder prediction 432 455 - -
Lal17g1408 842 MobiDBLite consensus disorder prediction 500 552 - -
Lal17g1408 842 PANTHER RNA RECOGNITION MOTIF-CONTAINING 46 834 - -
Lal17g1408 842 SMART rrm1_1 178 246 IPR000504 GO:0003723
Lal17g1408 842 SMART rrm1_1 263 331 IPR000504 GO:0003723
Lal17g1408 842 SMART rrm1_1 680 756 IPR000504 GO:0003723
Lal17g1408 842 CDD RRM1_MEI2_like 176 252 IPR034453 -
Lal17g1408 842 Pfam RNA recognition motif 2 678 774 IPR007201 -
Lal17g1408 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 250 IPR000504 GO:0003723
Lal17g1408 842 SUPERFAMILY RNA-binding domain, RBD 680 765 IPR035979 GO:0003676
Lal17g1408 842 MobiDBLite consensus disorder prediction 514 544 - -
Lal17g1408 842 Gene3D - 168 260 IPR012677 -
Lal17g1408 842 CDD RRM3_MEI2_like 681 765 IPR034454 -
Lal17g1408 842 PANTHER PROTEIN MEI2-LIKE 2 46 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1408 Lal-Chr17 15582351 15590219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1408 172 370 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 3.01e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1408 - - lang:109328336 1545.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1408 17 15582351 15590219 Lal4g1422 4 18425926 18433599 LSH