Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1405 ATGCACCCAATTACTGGATCCATAACTCTTCACTCTTCACTCTGCACATTCTCTTCTGATAAACCATCTTCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTAGATCAACCAACAATCTCTATGTTGCTTCCAAACCCAAAACTCTTCTCCAAAACCACCCACTTTATACACCTATCAATGAAACACTCTCCATTCAATTCAAAGAAAAAATCTTGTGTCTTGAAATATTAGGCATTGATGCAGGTAAAGCATTGTCTCAAAACCTTCAACTTCATTCAGCTACAATGGAATCCATTCATTCCATTATCTCATTCCTTCTATCCAAAGGTATTCATCAAAAAGACTTGCCTAGAATATTTGGCATGTGTCCCAAGATTCTAACTTCAAATATCAAAACTGATCTTAACCCAGTTTTTGATTTTCTCTTACAAGAACTTAGTGTCCCAGATCATAACTTTAGAAGGGTTGTTAAAAAGAACCCAAGATTGCTTACTTCTAGTGTTATGGATCAACTTAAACCAGCTTTGTTCTATCTTAAGAGACTTGGGTTCAAGGATTTGGAAGCATTGGCTTATCAAGATTCTATTTTGTTGGTATCTAATGTTGAAGGGACCCTTATTCCTAAGCTTAAGTATTTGGAAAATTTGGGATTTTCTAAAGATGAAGCTAGGTGCATGGTTTTGAGATGTCCATCATTGTTTACTTTCAGCATTGAAAATAATTTTCAGCCAAAGTTTGAGTATTTTTCTGTGGAAATGGGTGGAAAATTGGAGGAGCTGAAAGAATTTCCTCAGTACTTTGCTTTTAGTTTGGAGAATAGAATAAAGCCTAGGCATTTGGAGGTTTTGCAAAGTGGAATTCATTTACCTTTGTCAATGATGCTTAAAAGTACTGATGAAGCATTTGAGGAGCTGATAAAGCAAGGAGGTGGATGA 942 0.3567 MHPITGSITLHSSLCTFSSDKPSSSSSSSSSSSSSSRSTNNLYVASKPKTLLQNHPLYTPINETLSIQFKEKILCLEILGIDAGKALSQNLQLHSATMESIHSIISFLLSKGIHQKDLPRIFGMCPKILTSNIKTDLNPVFDFLLQELSVPDHNFRRVVKKNPRLLTSSVMDQLKPALFYLKRLGFKDLEALAYQDSILLVSNVEGTLIPKLKYLENLGFSKDEARCMVLRCPSLFTFSIENNFQPKFEYFSVEMGGKLEELKEFPQYFAFSLENRIKPRHLEVLQSGIHLPLSMMLKSTDEAFEELIKQGGG 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1405 313 MobiDBLite consensus disorder prediction 17 40 - -
Lal17g1405 313 SMART mt_12 156 187 IPR003690 GO:0003690|GO:0006355
Lal17g1405 313 SMART mt_12 190 221 IPR003690 GO:0003690|GO:0006355
Lal17g1405 313 SMART mt_12 226 258 IPR003690 GO:0003690|GO:0006355
Lal17g1405 313 SMART mt_12 119 151 IPR003690 GO:0003690|GO:0006355
Lal17g1405 313 SMART mt_12 84 114 IPR003690 GO:0003690|GO:0006355
Lal17g1405 313 SMART mt_12 259 292 IPR003690 GO:0003690|GO:0006355
Lal17g1405 313 Pfam mTERF 88 189 IPR003690 GO:0003690|GO:0006355
Lal17g1405 313 Pfam mTERF 199 305 IPR003690 GO:0003690|GO:0006355
Lal17g1405 313 PANTHER CGI-12 PROTEIN-RELATED 14 310 IPR003690 GO:0003690|GO:0006355
Lal17g1405 313 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 14 310 - -
Lal17g1405 313 Gene3D Transcription termination factor 3, mitochondrial 61 310 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1405 Lal-Chr17 15569231 15570172 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lal17g1405 mTERF 5.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1405 K15032 - gmx:100788221 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1405 17 15569231 15570172 Lal4g1421 4 18407568 18414285 LSH