Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1404 ATGACGTCACGTTCAAGTCATGGTCATGGTAGTAGTAGTAGCAGTGGAAGGACCCGTGTGGGGAAATACGAATTGGGTAGAACACTTGGTGAAGGAAATTTTGCAAAGGTCAAATTTGCCAAACACGTTGAAACTGGTGACAATGTTGCTATCAAGATTCTTGACAAGGAAAAAGTTCTCAAGCACAAAATGATTGGCCAGATAAAACGAGAAATATCAACAATGAAACTAATTAGACACCCAAATGTTATACGTATGCATGAGGTGATGGCAAGCAAAACAAAGATATACATTGTATTGGAATTTGTGACTGGTGGCGAGTTGTTTGATAAAATTGCACGCAATGGGAGGTTGAAAGAAGATGAAGCTAGAAAATATTTTCAACAGCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCATAGAGACCTAAAGCCGGAGAACTTGTTGCTCGATGCTAGTGGATTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTGCCTCAACAAGTCCGGGAAGATGGGCTGCTTCATACAACATGTGGTACACCAAATTATGTTGCCCCAGAGGTGATCCACAATAAAGGTTATGATGGTGCAATAGCAGATCTCTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGGCTGGCTATTTGCCCTTTGAAGAAAACAATCTTATGGCTTTATATAAAAAGATTTTCAAGGCTGAGTTCTCCTGTCCCCCATGGTTCTCTTCTAATGCTAAGAAACTAATCAAAAGAATCCTCGATCCCAACCCCGCGACACGGATAACAATTGCGGAGGTTATTGAGAATGAGTGGTTCAAGAAGGGATATAAGCCTCCTAGATTTGAGCAGGCTAATGTTAGTCTCGATGATATAAATTCCATTTTCAGTGAATCTATGGTAAGACTTTCATCTTTGCCGTTATCTTTATCAAATTTTGTTCATTTGAGTTTGAACCTTGATGTCAATGTTGATTGTGGAGCACAGGATTCACAAAATCTTGTTGTCGAGAGGCGCACAGAGGGGCCAGTGGCACCTGTGACCATGAACGCATTTGAGCTTATCTCTACATCTCAGGGCCTCAACCTGAGTAGTCTTTTCGAGAAGCAAATGGGACTTGTTAAACGGGAAACGAGATTTACATCCAAATGTTCAGCAAATGAGATAATTTCAAAAATTGAGGAAGCAGCAGGGCCTCTGGGTTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGACGGGTCGGAAAGGTCATCTTTCTGTAAACACAGAGATATTTGAGGTGGCCCCTTCGCTTTACATGGTCGAGTTGCGTAAGTCTGATGGAGATACTCTGGAATTTCACAAGTTCTACAAGAATCTAGCTACTGGGCTGAAAGATATTGTTTGGAAAGCAGAACCTATTGATGAAGAAAAATATGGTAGCAGTGCATCAAAATAA 1470 0.402 MTSRSSHGHGSSSSSGRTRVGKYELGRTLGEGNFAKVKFAKHVETGDNVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMHEVMASKTKIYIVLEFVTGGELFDKIARNGRLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDASGLLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAIADLWSCGVILFVLMAGYLPFEENNLMALYKKIFKAEFSCPPWFSSNAKKLIKRILDPNPATRITIAEVIENEWFKKGYKPPRFEQANVSLDDINSIFSESMVRLSSLPLSLSNFVHLSLNLDVNVDCGAQDSQNLVVERRTEGPVAPVTMNAFELISTSQGLNLSSLFEKQMGLVKRETRFTSKCSANEIISKIEEAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVNTEIFEVAPSLYMVELRKSDGDTLEFHKFYKNLATGLKDIVWKAEPIDEEKYGSSASK 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1404 489 SUPERFAMILY Protein kinase-like (PK-like) 20 314 IPR011009 -
Lal17g1404 489 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Lal17g1404 489 Pfam Protein kinase domain 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1404 489 SMART serkin_6 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1404 489 Pfam NAF domain 351 411 IPR004041 GO:0007165
Lal17g1404 489 CDD STKc_SnRK3 22 277 - -
Lal17g1404 489 CDD CIPK_C 355 470 - -
Lal17g1404 489 MobiDBLite consensus disorder prediction 1 21 - -
Lal17g1404 489 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 17 479 - -
Lal17g1404 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Lal17g1404 489 PANTHER SERINE/THREONINE KINASE 17 479 - -
Lal17g1404 489 Gene3D Kinase associated domain 1, KA1 349 474 - -
Lal17g1404 489 MobiDBLite consensus disorder prediction 1 19 - -
Lal17g1404 489 Gene3D Transferase(Phosphotransferase) domain 1 15 319 - -
Lal17g1404 489 ProSiteProfiles NAF domain profile. 349 373 IPR018451 GO:0007165
Lal17g1404 489 ProSiteProfiles Protein kinase domain profile. 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1404 Lal-Chr17 15557489 15563393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1404 12 482 CBL-interacting serine-threonine protein kinases AT1G01140 65.618 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal17g1404 Pkinase 1.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1404 - - gmx:100788746 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1404 17 15557489 15563393 Lal17g1404 17 15557489 15563393 ECH
Lal17g1404 17 15557489 15563393 Lal4g1417 4 18377322 18383702 LSH
Lal14g1818 14 17913344 17916141 Lal17g1404 17 15557489 15563393 PCT
Lal7g1251 7 18040134 18042226 Lal17g1404 17 15557489 15563393 PCT
Lal19g1373 19 16574583 16576854 Lal17g1404 17 15557489 15563393 PCT