Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1391 ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAAAAAGTGAAGATAGTGGAAATCAAAGCAAAGCTGGAGATAAAAGCCCGAAAGAATATGACAATGATACTTTGGTATTTATATCGATGTCTCACGAGTTGAAGGATGAGGGGAACAAGTTGTTCCAAAAGCGGGATGTTGAACGAGCTTTGGTGAAATATGAGAAAGCCCTCAAATTGCTTCCAAGCAATCATATAGATGTGTCGTATCTGCGGAGTAACATGGCTGCGTGCTACATGCAGATGGGACTCAGCGAGTACCCGAGGGCAATTCATGAATGCAATTTGGCTCTTGAAGTAACACCGAAGTACAGTAAAGCTTTATTGAAGAGGGCAAGGTGCTATGATGCTTTAAATAGGCTAGACTTAGCACTGAAGGATGTTAGTACTGTTTTGAAGATGGAGCCAAATAATATCATGGCAATGGAGATCTCAGATAATGTCAAAAGGGAACTCGAAAAGAAAGGATTAATAGTAAACGATACAGAAATTGAGTTGCCTCCCGATTATGCTGAGCCTCCGTATGCTTTGCCTACCAAAGAAGTAGTGAAAGAAAAGATGCACAGGAAAAAAAGCAACAAAGAGAAAGTGAAGGCTCCCGATAAAATTGTAGAAAAGCAAGCTGAGGATAAATCTGAAGAGAAGAAAACTGAGGACCGTATTGTTGCAAAGACGGCTGAGGAAAGTAATGCAGCAAAGATGGCAGAGGACAGTACTGTACAGAAGAAGGCTAAAAAATCGAAAAAGAAGGATAGGGAAATAATTAATGAGAAGAAGGATGATGTTAAGGAGGTTCTCGAGGAAATTAGTAACAATAAAAGTGAAGTTATACCTAAGAAAACAGCTAAACTTGTTTTTGGTGAGGATATAAGATGCGCTGAATTGCCAGTCAACTGCACCCTCTTTCAGCTAAGAGAAGCTATTTGTGACCGGTTCCCAAATCTTGGAGCAGTTCTTGTCAAATACAAAGACCAAGAAGGTGACTTAGTCACAATCACTTGTGATGAAGAATTAAGGTGGGCTGAAACAGGATCACAGGGTTCTATCCGGCTGTACATTGTAGAAGCCAATCCCGATCAGGATCCATTCCTTGAGAAACTTAAAGCGAAGGATGGGAAAAATGTTGGCGTTGTTATTGCTTCTGAGAATCATTGCATGATGAAAGCAAAGGACATTATTAGCTCATCTTGCATTGAGGATTGGATAATTCACTTCGCGCAACTGTTCAAGAACCATGTTGGGTTTGAGTCTGATAGATATTTAGATTTTCATGAACTTGGGATGAAGCTTTATTCCGAGGCCATGGAGGAGACAGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATTGCAGGAGGTAAGTTCCAAGAGATGGCAGCTCTAGCTTTGTTCAACTGGGGAAATGTGCATATGTCTAGGGCAAGAAAGAAAGTGTACTTAACCGAAGATTCTTCAAAAGAGCATATGCATGAACAAATTAAAAATTCATATGAATGGGCTCAAAAAGAGTATGCAAAAGCTGGAGAGAAATATGAAGCAGCCATTGAAATTAAATCAGATTTTTATGAAGGCTTCATGGCACTCGGACAGCAGCAGTTTGAGAAAGCAAAACTTTCTTCGTATTATGCCTTCAGTAGTAATGTCGATTTAGCAACATGGCCCTCCACCGAGGTTCTTCAGCTTTACAACAATGCCGAGAATAATATAGAGAAAGGGATACTGATATGGGAAGAATCAAAAGAGCAGCACCGGAGTGGAACCTGCGGTCCAAATGATATTAGATTACATTTGCAGAAGACGGGGTTGGCATCAGATGAAGCCGAAGAACAAGAAACAAAAATGAGGTGCCAAATAAACCTCCTGTGGGGTACCATGCTATATGAACGCTCAATCGTGGAATTCAAATTAGGACTACCATTATGGCATGAATCTCTGGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCATCTCGAACAGATATTGCTGTAATGTTGAAGAACCACTGTTCCAATGACACTTCGGTAGATGGTCTAGAATTCAAAATCGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTGGCAGAATGGAGTTCCGTCATTTCGTTTGGAACCCTTATTTAAAAGGAGAGCATCTAAAATTTATCATGCCTTAGAGCTTGCATGA 2208 0.4035 MGKKKKQVGEKSEDSGNQSKAGDKSPKEYDNDTLVFISMSHELKDEGNKLFQKRDVERALVKYEKALKLLPSNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPKYSKALLKRARCYDALNRLDLALKDVSTVLKMEPNNIMAMEISDNVKRELEKKGLIVNDTEIELPPDYAEPPYALPTKEVVKEKMHRKKSNKEKVKAPDKIVEKQAEDKSEEKKTEDRIVAKTAEESNAAKMAEDSTVQKKAKKSKKKDREIINEKKDDVKEVLEEISNNKSEVIPKKTAKLVFGEDIRCAELPVNCTLFQLREAICDRFPNLGAVLVKYKDQEGDLVTITCDEELRWAETGSQGSIRLYIVEANPDQDPFLEKLKAKDGKNVGVVIASENHCMMKAKDIISSSCIEDWIIHFAQLFKNHVGFESDRYLDFHELGMKLYSEAMEETVTSEEAQGLFDIAGGKFQEMAALALFNWGNVHMSRARKKVYLTEDSSKEHMHEQIKNSYEWAQKEYAKAGEKYEAAIEIKSDFYEGFMALGQQQFEKAKLSSYYAFSSNVDLATWPSTEVLQLYNNAENNIEKGILIWEESKEQHRSGTCGPNDIRLHLQKTGLASDEAEEQETKMRCQINLLWGTMLYERSIVEFKLGLPLWHESLEVAVEKFELAGASRTDIAVMLKNHCSNDTSVDGLEFKIDEIVQAWNEMYEAKKWQNGVPSFRLEPLFKRRASKIYHALELA 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1391 735 PANTHER PROTEIN PHOX3 2 734 - -
Lal17g1391 735 SMART PB1_new 288 365 IPR000270 GO:0005515
Lal17g1391 735 CDD PB1 292 362 - -
Lal17g1391 735 MobiDBLite consensus disorder prediction 194 235 - -
Lal17g1391 735 PANTHER PROTEIN CLMP1 2 734 IPR044517 -
Lal17g1391 735 SUPERFAMILY TPR-like 41 544 IPR011990 GO:0005515
Lal17g1391 735 Gene3D - 262 365 - -
Lal17g1391 735 Pfam PB1 domain 290 363 IPR000270 GO:0005515
Lal17g1391 735 ProSiteProfiles PB1 domain profile. 288 365 IPR000270 GO:0005515
Lal17g1391 735 MobiDBLite consensus disorder prediction 247 261 - -
Lal17g1391 735 Coils Coil 261 284 - -
Lal17g1391 735 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Lal17g1391 735 SMART tpr_5 40 73 IPR019734 GO:0005515
Lal17g1391 735 SMART tpr_5 114 147 IPR019734 GO:0005515
Lal17g1391 735 SMART tpr_5 78 113 IPR019734 GO:0005515
Lal17g1391 735 MobiDBLite consensus disorder prediction 194 261 - -
Lal17g1391 735 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Lal17g1391 735 Gene3D Tetratricopeptide repeat domain 38 168 IPR011990 GO:0005515
Lal17g1391 735 SUPERFAMILY CAD & PB1 domains 290 374 - -
Lal17g1391 735 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1391 Lal-Chr17 15329493 15334398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1391 23 147 Calmodulin-binding Proteins AT3G25230 32.374 2.17e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1391 - - gmx:100820306 1092.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1391 17 15329493 15334398 Lal17g1391 17 15329493 15334398 ECH
Lal19g1346 19 16326522 16328840 Lal17g1391 17 15329493 15334398 PCT
Lal17g1391 17 15329493 15334398 Lal19g1346 19 16326522 16328840 PCT