Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1380 ATGGCTGGAATGCTTCCTGGAGTTGAATCTGCTAGAAGAAGAAGGTTCCATAATAGTGGATTATGTTTAGATTCACCTTCTTTGTCTCCACATAATTCTTCAAGACGCTCTTCTTTTTGTTTATATGCAAAAAATCATGAATCACTTCTTCCTTCATTGATTTTGAATACACAGCAAAGAAACATGTTTAACCAGACACACCCAGATGAAAATATAGTAGGAGCAGCCAAAGAAGCTAAACAAAGATTGGATGAGAAGTTCAAACATCAAAGGAAATTAGAAAACAAAAGGCAAAATACTTATATGGAGGGAAGAAGGACAAGCCCAGAAGAGTTACAAAATTATGGGTCAAAGAAAAGTGGTTTAAGGAAATTCAATTGGACAAAATTGAGCATGAAGGCCTTAGAAGAAGAGGATTGTGCTGTGTGTTTAGAGACACTGAAGGATGGAGAGACACTGATTCATCTCCATTGTGAACATAGGTTTCATTCTAGATGTTTGAAACCATGGTTAGATAAAAATTCTTGTCCATGTTGCAGAACTACCATTATTTTCCCATAG 561 0.3601 MAGMLPGVESARRRRFHNSGLCLDSPSLSPHNSSRRSSFCLYAKNHESLLPSLILNTQQRNMFNQTHPDENIVGAAKEAKQRLDEKFKHQRKLENKRQNTYMEGRRTSPEELQNYGSKKSGLRKFNWTKLSMKALEEEDCAVCLETLKDGETLIHLHCEHRFHSRCLKPWLDKNSCPCCRTTIIFP 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1380 186 SMART ring_2 140 179 IPR001841 -
Lal17g1380 186 SUPERFAMILY RING/U-box 129 185 - -
Lal17g1380 186 ProSiteProfiles Zinc finger RING-type profile. 140 180 IPR001841 -
Lal17g1380 186 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 117 182 - -
Lal17g1380 186 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 94 - -
Lal17g1380 186 Coils Coil 76 96 - -
Lal17g1380 186 Pfam Ring finger domain 139 180 IPR001841 -
Lal17g1380 186 CDD RING-H2_PA-TM-RING 139 180 - -
Lal17g1380 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 184 IPR013083 -
Lal17g1380 186 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 117 182 - -
Lal17g1380 186 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 94 - -
Lal17g1380 186 MobiDBLite consensus disorder prediction 92 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1380 Lal-Chr17 15214155 15215475 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1380 1 88 C3H Transcription Factor Family AT2G15580 43.299 3.48e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1380 - - gmx:100527583 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1380 17 15214155 15215475 Lal17g1380 17 15214155 15215475 ECH
Lal17g1380 17 15214155 15215475 Lal21g1138 21 13959741 13961310 LSH
Lal17g1380 17 15214155 15215475 Lal4g1389 4 18154990 18156146 LSH