Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1375 ATGGGACGCGTAAAGATTGAGATAAAGAGGATCGAGAACAACACAACAAGGCAAGTTACCTTCTCAAAACGAAGAACCGGTATTCTGAAAAAGACTCATGAACTTTCTGTTCTCTGTGACGCTCAAATAGGACTCATCATCTTCTCTAGTAATGGGAAAATGTATCAATATTGCACTGAACCCTTTAGGATGGAGCAGATCATTGAAAAGTACCAGAGAGCAACAGGAACTTCCATAATGCATCAAGATCATCACTTCCAGGAAGATATATTCAAAGAAATGGGAATTTTGAGGCAGGAAACTCTTCGTCTTGAATTGGGAATTCAACGCTATCTTGGAGAAAACATAAGTTGTTTACAATATGAGGATTTGACTAAACTTGAAGAAGAATTGGAGAAATCTATGGCAAAGGTTCGAAATCGCCAGGAAAGAATTTTGGAAGAAGAACACAACAATTTATCCAATTGGGTAAAGGCAGCATTGGATTTTGAGCATGGTGCAGTAGAAGCAAATAAACCAATGCAGCAGCAGCCAGTAATGGATTACATCCCATTATTTGAAGACCAACCTGCT 573 0.3874 MGRVKIEIKRIENNTTRQVTFSKRRTGILKKTHELSVLCDAQIGLIIFSSNGKMYQYCTEPFRMEQIIEKYQRATGTSIMHQDHHFQEDIFKEMGILRQETLRLELGIQRYLGENISCLQYEDLTKLEEELEKSMAKVRNRQERILEEEHNNLSNWVKAALDFEHGAVEANKPMQQQPVMDYIPLFEDQPA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1375 191 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal17g1375 191 Coils Coil 121 148 - -
Lal17g1375 191 ProSiteProfiles K-box domain profile. 87 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal17g1375 191 Pfam K-box region 84 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal17g1375 191 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 190 - -
Lal17g1375 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal17g1375 191 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lal17g1375 191 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 - -
Lal17g1375 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal17g1375 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal17g1375 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal17g1375 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal17g1375 191 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal17g1375 191 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Lal17g1375 191 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1375 Lal-Chr17 15105207 15109132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1375 1 187 MADS-box Gene Family AT5G23260 42.439 6.52e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal17g1375 K-box 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1375 - - gmx:100783876 225.713