Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1374 ATGGGACGCGTAAAGATTGAGATAAAGAGGATCGAGAACAACACAACAAGGCAAGTTACCTTCTCAAAACGAAGAACCGGTATTCTGAAAAAGACTCATGAACTTTCTGTTCTCTGTGACGCTCAAATAGGACTCATCATCTTCTCTAGTAATGGGAAAATGTATCAATATTGCACTGAACCCTTTAGGATGGAGCAGATCATTGAAAAGTACCAGAGAGCAACAGGAACTTCCATAATGCATCAAGATCATCACTTCCAGGAAGATATATTCAAAGAAATGGGAATTTTGAGGCAGGAAACTCTTCGTCTTGAATTGGGAATTCAACGCTATCTTGGAGAAAACATAAGTTGTTTACAATATGAGGATTTGACTAAACTTGAAGAAGAATTGGAGAAATCTATGGCAAAGGTTCGAAATCGCCAGAATGAGCTCTTGCAACAGCAAATGGATAATCTGCGAAGGAAGGAAAGAATTTTGGAAGAAGAACACAACAATTTATCCAATTGGAGGGCAGCATTGGATTTTGAGCATGGTGCAGTAGAAGCAAATAAACCAATGCAGCAGCAGCCAGTAATGGATTACATCCCATTATTTGAAGACCAACCTGCTGGTACTTTGCTTCAACTTGGTGCTCCTGTTCATCCACACTTTCACTCATATCTTCACTTATCTCAGCCTAATTTTCAAGACTCTCATGAGCCATGA 708 0.3955 MGRVKIEIKRIENNTTRQVTFSKRRTGILKKTHELSVLCDAQIGLIIFSSNGKMYQYCTEPFRMEQIIEKYQRATGTSIMHQDHHFQEDIFKEMGILRQETLRLELGIQRYLGENISCLQYEDLTKLEEELEKSMAKVRNRQNELLQQQMDNLRRKERILEEEHNNLSNWRAALDFEHGAVEANKPMQQQPVMDYIPLFEDQPAGTLLQLGAPVHPHFHSYLHLSQPNFQDSHEP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1374 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal17g1374 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal17g1374 235 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Lal17g1374 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal17g1374 235 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lal17g1374 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal17g1374 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal17g1374 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal17g1374 235 ProSiteProfiles K-box domain profile. 87 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal17g1374 235 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 230 - -
Lal17g1374 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal17g1374 235 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Lal17g1374 235 Pfam K-box region 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal17g1374 235 Coils Coil 121 173 - -
Lal17g1374 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1374 Lal-Chr17 15084897 15088924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1374 1 232 MADS-box Gene Family AT5G23260 43.426 2.12e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal17g1374 K-box 6.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1374 - - gmx:100783876 301.597