Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1368 ATGGCTTCTGATATTTCGTTTGAGGATCTCAAAAATGAGAATGTTGATCTTGAAAACATTCCAATTGAGGAGGTCTTTGAGCATCTAAAATGTAGTAAGGAGGGTTTGTCATCTGAAGAAGGACAAAAGAGGCTTCTAGTTTTTGGCCCCAACAAACTAGAGGAGATAACAGAGAGTAAGTTTCTCAAGTTCTTGGGTTTTATGTGGAATCCACTATCTTGGGTTATGGAGGCAGCTGCTATCATGGCAATTGTGTTGGCCAATGGAGGGGGCAAGCCACCAGATTGGCAAGATTTTACTGGTATTGTGGTCTTGCTTATCATCAACTCAACCATTAGTTTCATTGAGGAAAACAATGCAGGAAATGCTGCAGCAGCTTTGATGGCTGGTCTTGCTCCTAAAACTAAGGCTATTGTCATTGCCACGGGTGTCCACACCTTCTTCGGTAAGGCTGCACACCTTGTAGACAGCACCAACAATGTTGGTCACTTCCAAAAGGCAAGAGCAGGAATCACTGAGGTGCACTTTTTGCCCTTCAATCCTGTGGATAAGCGAACTGCTATTACTTTCATTGACAGCAATGGCAACTGGCACAGAAGCAGCAAAGGTGCTCCTGAGCAAATTATTGAACTTTGTGGACTTAAAGGAGAGGTTTTAAAAAAGGCCCACAAAACCATTGATTCCTATGCTGAACGTGGTTTACGTTCCTTGGGTGTTTCTCGCCAGACTGTTTCAGAGAAGACCAAGGAGAGTGCAGGAGATTCATGGGAGTTCTTGGGTCTATTGCCCCTCTTTGACCCTCCAAGGCATGACAGTGCTGAGACTATTCGTCGTGCTCTTGACCTTGGTGTCAATGTTAAGATGATCACCGGTGACCAACTTGCTATTGGCAAAGAAACTGGTCGTAGACTTGGAATGGGCACCAATATGTACCCTTCATCCTCCCTCCTTGGTAATAGCAAGGATTCTGCCATTGCATCAATCCCAATTGATGAACTCATTGAGAAGGCCGATGGATTTGCAGGAGTCTTCCCTGAGCACAAGTATGAAATTGTCAAGAGATTGCAAGATAAGAAGCACATTGTTGGAATGACCGGAGATGGTGTGAACGACGCACCAGCACTTAAGAAAGCAGATATTGGTATTGCAGTGGACGACGCAACTGACGCAGCCAGAAGTGCCTCAGACATTGTTTTGACAGAACCAGGACTTAGTGTGATTGTGAGTGCTGTGTTGACAAGCAGGGCCATCTTTCAAAGGATGAAGAACTACACAATCTATGCCGTTTCCATCACAATCCGTATTGTGCTTGGATTCTTGCTCGTTGCTCTAATATGGAAGTTTGACTTCTCACCCTTCATGGTTTTGATCATTGCCATCTTGAATGACGGAACCATCATGACCATCTCCAAAGATAGGGTGAAGCCATCTCCTCTTCCTGACTCATGGAAGCTTAACGAAATATTTGCCACCGGAGTTGTTCTTGGGACATACATGGCCATCATGACTGCAGTCTTTTTCTATGCGGTTCATGACACTGATTTCTTCTCTAGAATTTTCGGTGTCAAGTCAATTGCAGACAGTGAGGAGAATCTTAACTCAGCTCTCTACCTTCAAGTGAGTATCATTAGTCAGGCACTCATCTTTGTGACTCGGTCAAGGAGCTGGTCATATTTTGAACGCCCTGGTGCGATGCTTTGTATAGCCTTCCTTGCTGCACAACTGGTGGCCACTATCATTGCTGTGTATGCACATTGGGACTTTGCTAGAATCAATGGAGTTGGGTGGAGATGGGCTGGAGTTATATGGATCTATAGCATTGTCACATATATCCCTCTTGACATCCTCAAGTTTTTTATTCGCATGGGACTCTCAGGCAGTGCTTGGAACAGTATGCTCCAAAACAAGACTGCATTCACAACAAAGAAGGACTATGGTAGAGGAGATAGGGAAGCTCAATGGGCAGTGGCTCAACGCACATTGCACGGTCTTCAAGTTCCTGATGCACACTTAAACAACCAACATGAGCACTCTGAAATAGCTGAGCAGGCTAAGAAACGTGCTGAGGCTGCTAGGTTGAGGGAGCTTCACACACTCAAGGGACATGTGGAGTCAGTGGTGAAATTGAAGGGTCTTGACATTGAAACCATCCAACAACACTACACAGTCTAA 2172 0.4494 MASDISFEDLKNENVDLENIPIEEVFEHLKCSKEGLSSEEGQKRLLVFGPNKLEEITESKFLKFLGFMWNPLSWVMEAAAIMAIVLANGGGKPPDWQDFTGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKAIVIATGVHTFFGKAAHLVDSTNNVGHFQKARAGITEVHFLPFNPVDKRTAITFIDSNGNWHRSSKGAPEQIIELCGLKGEVLKKAHKTIDSYAERGLRSLGVSRQTVSEKTKESAGDSWEFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGNSKDSAIASIPIDELIEKADGFAGVFPEHKYEIVKRLQDKKHIVGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGVVLGTYMAIMTAVFFYAVHDTDFFSRIFGVKSIADSEENLNSALYLQVSIISQALIFVTRSRSWSYFERPGAMLCIAFLAAQLVATIIAVYAHWDFARINGVGWRWAGVIWIYSIVTYIPLDILKFFIRMGLSGSAWNSMLQNKTAFTTKKDYGRGDREAQWAVAQRTLHGLQVPDAHLNNQHEHSEIAEQAKKRAEAARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1368 723 PRINTS H+-transporting ATPase (proton pump) signature 222 240 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g1368 723 PRINTS H+-transporting ATPase (proton pump) signature 337 353 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g1368 723 PRINTS H+-transporting ATPase (proton pump) signature 365 381 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g1368 723 PRINTS H+-transporting ATPase (proton pump) signature 396 421 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g1368 723 PRINTS H+-transporting ATPase (proton pump) signature 537 558 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g1368 723 Gene3D - 370 622 - -
Lal17g1368 723 Gene3D - 67 140 - -
Lal17g1368 723 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 340 452 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g1368 723 Pfam haloacid dehalogenase-like hydrolase 201 379 - -
Lal17g1368 723 Gene3D - 141 271 IPR023299 GO:0000166
Lal17g1368 723 PANTHER CALCIUM-TRANSPORTING ATPASE 4 137 - -
Lal17g1368 723 PANTHER CALCIUM-TRANSPORTING ATPASE 136 166 - -
Lal17g1368 723 PANTHER CALCIUM-TRANSPORTING ATPASE 166 703 - -
Lal17g1368 723 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 622 IPR023298 -
Lal17g1368 723 SUPERFAMILY HAD-like 257 411 IPR036412 -
Lal17g1368 723 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Lal17g1368 723 PANTHER PLASMA MEMBRANE ATPASE 166 703 - -
Lal17g1368 723 PANTHER PLASMA MEMBRANE ATPASE 136 166 - -
Lal17g1368 723 PANTHER PLASMA MEMBRANE ATPASE 4 137 - -
Lal17g1368 723 Gene3D - 673 723 - -
Lal17g1368 723 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Lal17g1368 723 PRINTS P-type cation-transporting ATPase superfamily signature 260 271 - -
Lal17g1368 723 PRINTS P-type cation-transporting ATPase superfamily signature 282 292 - -
Lal17g1368 723 PRINTS P-type cation-transporting ATPase superfamily signature 365 384 - -
Lal17g1368 723 PRINTS P-type cation-transporting ATPase superfamily signature 388 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1368 Lal-Chr17 15024889 15029949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1368 161 723 Primary Pumps ATPases AT3G42640 82.270 0.0 969
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1368 K01535 - gmx:100778065 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1368 17 15024889 15029949 Lal17g1368 17 15024889 15029949 ECH