Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1353 ATGAGTGAGAAAGATTTTCAATCAACGTTACTCCATGGAAAATACGAGCTAGGTCGTTTATTAGGTCATGGAACCTTCGCGAAGGTGTACCATGCGAAGAACCTTGAAACTGGAAAATTCGTAGCTATGAAAATCGTGGGTAAAGAGAAGGTGATAAAAGTTGGTATGATGGAACAAATGAAACGAGAGATCTCAGCAATGAACATGGTGAAACACCCAAACATTGTTCAACTTCACGAAGTTATGGCTAGCAAATCAAAGATCTACATCGCCATGGAACTTGTTCGTGGTGGCGAACTTTTCAACAAGATCGCTAAAGGTCGACTTAGAGAAGACGTTGCTAGAGTCTACTTTCAACAACTCATCTCAGCGGTGGACTTCTGCCACTCACGCGGCGTTTACCACCGTGATCTTAAGCCGGAGAATCTCCTCCTCGACGAAGAAGGGAACCTCAAAATCAGTGATTTCGGATTCAGCACGTTTTCTGAACACTTAAAACAAGATGGGTTATTGCACACCACGTGTGGAACCCCTGCTTACGTGGCACCGGAGGTGATCGGAAAGAAAGGTTACGACGGTGCTAAAGCTGATATATGGTCTTGTGGGGTAATTCTTTATGTTCTTCTTTCTGGTTTTTTACCTTTTCAAGATGATAATTTAATGGTTATGTATAGGAAAATTTACCGCGGTGACTTTAAATGTCCACCGTGGTTTTCCGGCGAAGCTCGTCGTCTAATTACTAAGTTTCTCGACCCAAATCCGAATACTCGTATTACAATCACAAGGATCATGGATTCTTCTTGGTTTAAGAAATCAACACCGAAAAATATGAACATTTCTGAACGTGATACTGAAGAGAAGTTAAAACAAGTGGTGCAACCAATGACTATGAATGCTTTTCATATAATATCTCTATCAGAAGGGTTCAATTTGTCACCATTGTTCGAGGAGAAGAAGAAGGAAGAGATGATGTTTGCAACGACGAGTTCAGCTAGTAGTGTAATTTCTAGGTTAGAAGAAGTTGCAAAGGCTATGAAGTTTGATGTGAAGAAAAGTGAGACACAGGTGAAGATGCAAGGTAAGGAAAAAGGGCGAAAAGGTAAATTGGGTATAGCGGCGGATATATACGCCGTGACGCCGTCGTTTTTGGTGGTGGAAGTGAAGAAGGATCACGGTGATACTTTAGAGTATAATCAGTTCTGTAATAAGGAACTTCGTCCTGGGTTGAAAGATATATTGTGGACTTCATCTTCAGAAAATAATAATACAAATCTGTTTGAAGATTAA 1287 0.4071 MSEKDFQSTLLHGKYELGRLLGHGTFAKVYHAKNLETGKFVAMKIVGKEKVIKVGMMEQMKREISAMNMVKHPNIVQLHEVMASKSKIYIAMELVRGGELFNKIAKGRLREDVARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEEGNLKISDFGFSTFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADIWSCGVILYVLLSGFLPFQDDNLMVMYRKIYRGDFKCPPWFSGEARRLITKFLDPNPNTRITITRIMDSSWFKKSTPKNMNISERDTEEKLKQVVQPMTMNAFHIISLSEGFNLSPLFEEKKKEEMMFATTSSASSVISRLEEVAKAMKFDVKKSETQVKMQGKEKGRKGKLGIAADIYAVTPSFLVVEVKKDHGDTLEYNQFCNKELRPGLKDILWTSSSENNNTNLFED 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1353 428 Gene3D Transferase(Phosphotransferase) domain 1 97 275 - -
Lal17g1353 428 SUPERFAMILY Protein kinase-like (PK-like) 12 298 IPR011009 -
Lal17g1353 428 ProSitePatterns Protein kinases ATP-binding region signature. 21 48 IPR017441 GO:0005524
Lal17g1353 428 PANTHER - 10 416 - -
Lal17g1353 428 Gene3D Phosphorylase Kinase; domain 1 12 96 - -
Lal17g1353 428 Gene3D Kinase associated domain 1, KA1 292 415 - -
Lal17g1353 428 ProSiteProfiles NAF domain profile. 292 316 IPR018451 GO:0007165
Lal17g1353 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Lal17g1353 428 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1353 428 CDD CIPK_C 298 410 - -
Lal17g1353 428 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 6 10 416 - -
Lal17g1353 428 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1353 428 Pfam NAF domain 294 351 IPR004041 GO:0007165
Lal17g1353 428 CDD STKc_SnRK3 14 268 - -
Lal17g1353 428 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1353 Lal-Chr17 14849162 14850448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1353 10 417 CBL-interacting serine-threonine protein kinases AT4G30960 74.109 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal17g1353 Pkinase 8.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1353 - K07198 gmx:547644 695.656