Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1343 ATGTTTGATTGCGGTTACAAGTCACAATACATGGGTGGCCAGAGGGAAAAGTTTGTGAGGTTGGATGATTTGGATTCTAGACTATCTTCACCTTCTGGTGCTGGAATCAGATCATGTGGATTCAGTATTGATAAATTAAGCCACAGTGGCAATGGAAGCAGCACAATAACCTCTAAGTCTTTTAAAATGGGAATGAAAAAGGGATCTGAAGGACTTAAGTCTATTGGTCGATCACTTGCATCTGGGGTATCTAGGGCAGTGTTCCCGGAAGATCTTAAAGTTTCAGAAAAGAAAATATTTGACCCTCAAGACAGATTTTTGCTATTGTGGAATAAGCTTTTTGTTATCTCATGCATTTTGTCTGTGTCTGTTGATCCACTGTTTTTTTATCTCCCTGTCATCAATGATTCATTGAATTGTCTTGGTATAGACCAAAAGTTGGCAGTTATAGTTACCACCTTGAGGACTGTTATCGATGTTTTCTATCTTCTACACATGGCTCTCCAATTTCGCACTGCCTATATTGCTCCATCATCTCGTGTTTTCGGACGGGGTGAGCTAGTGATAGATCCGCGACAAATAGCCAAGCGATACTTGCAGCAGTATTTCATTATTGATTTCCTATCAGTGTTGCCATTACCACAGATTGTGGTTTGGAGATTTCTTCATAGGTCAAAAGGTTCAGATGTACTAGCAACAAAGAAGGCATTGTTGTTCATCATTTTACTTCAATACATTCCGAGATTCCTCCGGATGGTACCATTGACTTCCGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCAAATTATTTGCTCTTATTCATGCTTGCCAGCCATATAGTTGGATCATTTTGGTACTTGCTAGCTGTTGAACGCAATGACTCGTGCTGGCAAAAGGCTTGTAGAGAATCTATTGATACTGTGTGCAATAAAAATTTCTTGTATTGTGGCCACCAATACATGAATGGTTATAGTGCCTGGCAGAATAAAAGTGATGATATTCTCCACTCTGAGTGCTATGCAGATGATACTAATACACCTTTTGAATATGGAATTTTCCAACAAGCCTTGTCATCTGGTATTTTTTCATCTAAGAAGTTCTTCTCCAAGTACTGCTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGACTTCATACTAGCACCTATCCTGGAGAGGTTATCTTTTCAATCTCACTAGCCATATCTGGTCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACGTATCTTCAGTCTCTTACCATTAGGCTTGAGGAGATGAGAGTCAAAAGGCATGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACCAGAGCTTAGAGAACGTGTGAGACGATATGATCAATATAAGTGGTTAGCGACACGTGGTGTAGATGAAGAAAGTTTGGTTCAGAGTCTACCGAAGGATCTTCGAAGAGACATTAAGCGTCACCTCTGTCTAGCATTAGTGAGAAGGGTCCCGCTATTTGAGAGTATGGATGAGAGATTGCTAGATGCCATATGTGAGAGACTGAAGCCCTGTCTGTTTACAGAGAGTACTTACATTGTTCGGGAAGGAGATCCGGTCGATGAGATGCTTTTCATAATACGAGGTCGCCTCGAGAGTGTTACCACAGATGGTGGGAGAAGTGGATTTTTCAATCGCAGTTTTCTGAAAGAGGCTGACATCTGCGGCGAGGAGCTTTTAACCTGGGCACTGGATCCCAAATCTGGGTCTAACCTTCCATCGTCTACTCGAACTGTTAAGGCTTTAACAGAGGTTGAGGGATTTGCTTTAATTGCTGATGAGTTAAAATTTGTTGCCAGTCAATTTAGGCGCCTTCACAGTAGACAGGTTCAACACACCTTCCGCTTTTACTCCCAGCAATGGAGGACTTGGGCTGCATGCCTTATTCAAGCAGCATGGCGTCGTTATACCAAAAGAAAAACCGCGGAACTTCATAGAAAGGAAGAACCCGGGGAGTCAAAAGGAACTCACAACAATAGCAGTGGTGGTCCATACAGTATTGGTGCCACCTTCTTGGCCTCAAGATTTGCAGTGAATGCTCTTCGAGGCGTACATCGCAATCGGAATGCTAAGACTGCCAAGGAGTTAGCAAAACTACAGAAGCCTCATGAGCCTGACTTTACTGCACATGATGCAGACTAA 2211 0.4274 MFDCGYKSQYMGGQREKFVRLDDLDSRLSSPSGAGIRSCGFSIDKLSHSGNGSSTITSKSFKMGMKKGSEGLKSIGRSLASGVSRAVFPEDLKVSEKKIFDPQDRFLLLWNKLFVISCILSVSVDPLFFYLPVINDSLNCLGIDQKLAVIVTTLRTVIDVFYLLHMALQFRTAYIAPSSRVFGRGELVIDPRQIAKRYLQQYFIIDFLSVLPLPQIVVWRFLHRSKGSDVLATKKALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAANYLLLFMLASHIVGSFWYLLAVERNDSCWQKACRESIDTVCNKNFLYCGHQYMNGYSAWQNKSDDILHSECYADDTNTPFEYGIFQQALSSGIFSSKKFFSKYCYCLWWGLQNLSTLGQGLHTSTYPGEVIFSISLAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRHDSEQWMHHRLLPPELRERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADICGEELLTWALDPKSGSNLPSSTRTVKALTEVEGFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACLIQAAWRRYTKRKTAELHRKEEPGESKGTHNNSSGGPYSIGATFLASRFAVNALRGVHRNRNAKTAKELAKLQKPHEPDFTAHDAD 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1343 736 ProSiteProfiles IQ motif profile. 645 674 IPR000048 GO:0005515
Lal17g1343 736 SUPERFAMILY cAMP-binding domain-like 439 626 IPR018490 -
Lal17g1343 736 SMART cnmp_10 509 640 IPR000595 -
Lal17g1343 736 Gene3D - 113 434 - -
Lal17g1343 736 PRINTS EAG/ELK/ERG potassium channel family signature 166 175 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g1343 736 PRINTS EAG/ELK/ERG potassium channel family signature 378 395 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g1343 736 PRINTS EAG/ELK/ERG potassium channel family signature 404 415 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g1343 736 PRINTS EAG/ELK/ERG potassium channel family signature 422 431 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g1343 736 PRINTS EAG/ELK/ERG potassium channel family signature 472 479 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g1343 736 MobiDBLite consensus disorder prediction 711 736 - -
Lal17g1343 736 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 733 - -
Lal17g1343 736 Pfam Ion transport protein 109 435 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal17g1343 736 Gene3D Jelly Rolls 507 627 IPR014710 -
Lal17g1343 736 ProSiteProfiles cAMP/cGMP binding motif profile. 509 593 IPR000595 -
Lal17g1343 736 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 733 - -
Lal17g1343 736 SUPERFAMILY Voltage-gated potassium channels 101 431 - -
Lal17g1343 736 MobiDBLite consensus disorder prediction 665 686 - -
Lal17g1343 736 CDD CAP_ED 509 640 IPR000595 -
Lal17g1343 736 Gene3D Helix hairpin bin 437 500 - -
Lal17g1343 736 MobiDBLite consensus disorder prediction 710 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1343 Lal-Chr17 14709512 14718099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1343 1 734 Ion Channels AT2G23980 75.134 0.0 1140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1343 K05391 - gmx:100820202 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1343 17 14709512 14718099 Lal17g1343 17 14709512 14718099 ECH
Lal17g1343 17 14709512 14718099 Lal21g1102 21 13572132 13580978 LSH