Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1332 ATGCAGCAAGGTGATCAAACGGTTCTAAACTTGAGGCCTGGTGGTGGAGGCGGTGGTGGTCGCGGCGGCGGAAGCAGACTCTTCGCTCCTCGATTCGATTCTTCTTTCTCACCTGATCTCCCCTTTTTACGCCCTCATGGCGGCGCTGCTACTACTTCTATCAAGGCTGGAGGCTCACGGTTTGAGGGTCATGAGCGTGTGCAATATACCCGAGATCAGATTTTACAGCTCAGAGAGATTGTTGAAATCCCCAATGACATTCTAAAGATCAAACAAGAAATAGGAGCTGAACTTTTTGGTGATGATCAAAGTCAGGGTAATGCAGAAAGCAACCCTACACAGCAAATTCAAAATCGATATTCTGAACCAGATAACCGTGACTGGCGTGTTCGTTCTGGACAACTCCCTACTAATCCAGATGAGTTTGCTAGTAGATTTGACTCCAGAGAGCATGATGTTAACCAGGTGAATTCCCAGTTTGCAAGGACAAAGATCTCTTCAAACCAAGGGGGAGGACCTGCTCCGACTCTTGTGAAGGCTGAGGTTCCATGGTCAACTAGAAGGGGAAGTCTTTCTGAAAAGGATCGTGTCTTGAAGACCGTGAAAGGGCAATTTTCCTTGGATGGTGGTACTGGCAAAATACTAAATAAGTTGACTCCTGAGAAATTTGATCTCCTGAAGGGTCAGTTGATCGATTCTGGCATTACGTCAGCTGATATATTGAAGGGAGTCATTTCACTTATATTTGATAAGGCTGTTCTAGAACCAACATTTTGCCCCATGTATGCTCAGTTGTGTTCTGATCTTAATGAGAAGCTGCCTCCTTTCCCTTCGGAAGAACCTGACGGGAAAGATATCACTTTCAAGAGAGTGCTCTTGAATATCTGCCAGGAAGCTTTTGAAGGTGCACATAATCTGAGGGAAGAGTTAAAACAAATGACTGCTCCTGAGCAGGAGTTGGAGCGTACGGACAAGGAAAGGCTGGTCAAGCTTCGTACCCTCGGAAATATCCGTTTAATTGGTGAACTGTTGAAGCAGAAGATGGTTCCTGAGAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGAGCCCCAGACAACAACTCTTGTCCAGCTGAGGAAAATGTTGAAGCCATATGCCAATTTTTCATCACTATCGGCAAGCAGCTTGATGAAAGTCCTAAATCACGACGCATAAATGACATGTACTTTAGCCGATTAAAAGAACTGAGCACAAACTCCCAACTCGCACAACGGCTTAGGTTCATGGTTCTTAACGTTATAGAATTACGTGCTAATAATTGGGTTCCTAGACGCGAAGAGGTAACAGCTAAAACGATCACTGAAATTCATTTGGAGGCAGAAAAAAATCTTGGAATGCGTCCAGGTGCCTTTGCTAGTAGTATGAGGAATAGCCGTGGTGGTGTTCAAGGAAATGCATTTGCTGGGGGTTTCCCTGTCATTCGACCCGGTACAGGGGGTTTCATGCCTGGAATGCCAGGGAACAATAAAATGCCCGGGACGCCTGGAATTGGTAATGACAACTGGGAGACGCCTAGGACTCGAAACACTCCAAGAGGATACTTGTCAGGTAATCAAGCCGCAGGACGCGGCAACTCCTCTTTACCTTCCAAGTCCACAACCCTGGACTCGAAGTTTCTACCTCAAGGTAGTGGTGGTATTACAAGTGGGAGTAGTGCCCTACTGCATGGGAGTGGGACTGTTTCTGCTCGCCCATCAAACATTGTTGTAGGTACTGAGGCTGCACCTCAATTCACTCCGCCTGCTAAAACTGTTTCTTCCGTGTCCTCCGAGAAGCCACAAGCTCCTGCTTCAAAATTCAATCTTGTTGATCTTCGCCGCAAAACGTCCTCCCTTCTGGAAGAATATTTCAGTGTTAGGATTTTGGACGAGGCATTGCAGTGCGTGGAAGAATTAAAATCTCCATCTTACCACCCGGAGGTTGTTAAGGAAGCCATTTCCCTTGCACTTGATAAAAGTCCACCATGTGTTGAACCTGTTGCCAATCTTCTCGAGTATCTCTTCATTAAGAAGGTTCTTACAGCTAGGGATATAGGGACTGGTCTTTTGCTATTTGCTTCTCTGCTGGATGACATTGGTATAGATTTACCTAAAGCTCCAAATAATTTCGGCGAGATAATCGGGAAACTAATTATTTGTGGAGCTGTGGATTTTAAGGTGGTGACAGAAATCCTCAAGAAGGTGGAAGATGATCTATTCCAGAAAGTAGTATTCGATTCGGCAATAGGGGTCATCAAATCTGCATCTGGGCAAGCTGTTTTGGATTCACAAGCATCCGATATTGAGCACTGCCAGAGTCTGATAAAGTGA 2352 0.4545 MQQGDQTVLNLRPGGGGGGGRGGGSRLFAPRFDSSFSPDLPFLRPHGGAATTSIKAGGSRFEGHERVQYTRDQILQLREIVEIPNDILKIKQEIGAELFGDDQSQGNAESNPTQQIQNRYSEPDNRDWRVRSGQLPTNPDEFASRFDSREHDVNQVNSQFARTKISSNQGGGPAPTLVKAEVPWSTRRGSLSEKDRVLKTVKGQFSLDGGTGKILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSEEPDGKDITFKRVLLNICQEAFEGAHNLREELKQMTAPEQELERTDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGAPDNNSCPAEENVEAICQFFITIGKQLDESPKSRRINDMYFSRLKELSTNSQLAQRLRFMVLNVIELRANNWVPRREEVTAKTITEIHLEAEKNLGMRPGAFASSMRNSRGGVQGNAFAGGFPVIRPGTGGFMPGMPGNNKMPGTPGIGNDNWETPRTRNTPRGYLSGNQAAGRGNSSLPSKSTTLDSKFLPQGSGGITSGSSALLHGSGTVSARPSNIVVGTEAAPQFTPPAKTVSSVSSEKPQAPASKFNLVDLRRKTSSLLEEYFSVRILDEALQCVEELKSPSYHPEVVKEAISLALDKSPPCVEPVANLLEYLFIKKVLTARDIGTGLLLFASLLDDIGIDLPKAPNNFGEIIGKLIICGAVDFKVVTEILKKVEDDLFQKVVFDSAIGVIKSASGQAVLDSQASDIEHCQSLIK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1332 783 SUPERFAMILY ARM repeat 614 757 IPR016024 -
Lal17g1332 783 SMART if4_15 208 434 IPR003890 GO:0003723|GO:0005515
Lal17g1332 783 MobiDBLite consensus disorder prediction 514 557 - -
Lal17g1332 783 SUPERFAMILY ARM repeat 214 437 IPR016024 -
Lal17g1332 783 MobiDBLite consensus disorder prediction 103 121 - -
Lal17g1332 783 Pfam MA3 domain 619 729 IPR003891 -
Lal17g1332 783 Gene3D - 211 447 - -
Lal17g1332 783 Gene3D - 615 777 - -
Lal17g1332 783 ProSiteProfiles MI domain profile. 618 740 IPR003891 -
Lal17g1332 783 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 782 - -
Lal17g1332 783 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 782 IPR045208 GO:0003743
Lal17g1332 783 SMART ma3_7 619 731 IPR003891 -
Lal17g1332 783 MobiDBLite consensus disorder prediction 1 31 - -
Lal17g1332 783 MobiDBLite consensus disorder prediction 100 137 - -
Lal17g1332 783 MobiDBLite consensus disorder prediction 507 557 - -
Lal17g1332 783 Pfam MIF4G domain 213 434 IPR003890 GO:0003723|GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1332 Lal-Chr17 14571694 14577959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1332 1 781 Eukaryotic Initiation Factors Gene Family AT5G57870 61.673 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1332 K03260 - gmx:100781275 1103.58