Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1320 ATGGCTAAACTATCAAAACAACCCAAGAAAAACAATGCAACCAATGATAATAATGACAAGAACCTTAATGCAACAAACACTGTCACCACCAAGGTGAAAAGAACAAGGAGAAGTGTCCCTAGAGATTCTCCTCCTCAACGTAGTTCAATATACCGAGGAGTCACTAGGCATAGGTGGACAGGAAGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCACAGAACAAGAAAGGACGACAAGGTGCTTATGATGATGAAGAGGCAGCAGCACATGCTTATGATCTTGCAGCATTGAAATATTGGGGTCAAGAAACCATTCTTAACTTTCAGTTACCAACATACGAAAATGAACTGAGAGAAATGGATGGTATATCAAGAGAGGAGTATATTGGATCTTTAAGGAGGAAAAGTAGTGGTTTTTCTCGTGGAATTTCTAAATACAGGGGGGTTGCAAGACACCATCATAATGGAAGATGGGAAGCTAGGATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTCGGAACTTATGCTACCCAAGAAGAAGCTGCCACAGCGTATGATATGGCAGCTATTGAACATCGTGGTCTCAATGCCATCACAAATTTCGACCTTAGCCATTATATAAAGTGGCTTAAGCCCAATCACAACAATAACAATGATACCAATATAATTATTTCTAACCCTATTGTTTGTAATACCAACATTACCCCAAACCCTAATCAAGAAAAGGGTTGTAACTTATTCAGCAGTCAAGAATCATCGTCATTCAATAACGGAGAAGATCGAATCACAATGACTCAACATCGACCGGCTTATGCCACATCAGCCCTAGGGATGTTGCTTAAGCCATCCAAGTTTAGGGAAATGGTGGAGATGACATCGAATTTGACACCACCGGAGTGTGAGTTGTCGTCGTGCATATTTCCTGATGAGATTCAGACATACTTTGATTGTGAAGATTATAGCAAATATGGAGAAAGTGATGATCTCATGTTCAATGAACTCAACTCATATTTCCCCCCTATATTCCATTTTGATGACTTTGATATATGCATGAAGTAA 1074 0.3976 MAKLSKQPKKNNATNDNNDKNLNATNTVTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQETILNFQLPTYENELREMDGISREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEHRGLNAITNFDLSHYIKWLKPNHNNNNDTNIIISNPIVCNTNITPNPNQEKGCNLFSSQESSSFNNGEDRITMTQHRPAYATSALGMLLKPSKFREMVEMTSNLTPPECELSSCIFPDEIQTYFDCEDYSKYGESDDLMFNELNSYFPPIFHFDDFDICMK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1320 357 SMART rav1_2 50 119 IPR001471 GO:0003700|GO:0006355
Lal17g1320 357 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Lal17g1320 357 MobiDBLite consensus disorder prediction 1 52 - -
Lal17g1320 357 ProSiteProfiles AP2/ERF domain profile. 50 113 IPR001471 GO:0003700|GO:0006355
Lal17g1320 357 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 339 - -
Lal17g1320 357 SUPERFAMILY DNA-binding domain 148 209 IPR016177 GO:0003677
Lal17g1320 357 MobiDBLite consensus disorder prediction 7 33 - -
Lal17g1320 357 SUPERFAMILY DNA-binding domain 49 114 IPR016177 GO:0003677
Lal17g1320 357 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Lal17g1320 357 PRINTS Ethylene responsive element binding protein signature 189 209 IPR001471 GO:0003700|GO:0006355
Lal17g1320 357 Gene3D AP2/ERF domain 148 209 IPR036955 GO:0003700|GO:0006355
Lal17g1320 357 Gene3D AP2/ERF domain 50 114 IPR036955 GO:0003700|GO:0006355
Lal17g1320 357 Pfam AP2 domain 148 198 IPR001471 GO:0003700|GO:0006355
Lal17g1320 357 Pfam AP2 domain 50 105 IPR001471 GO:0003700|GO:0006355
Lal17g1320 357 CDD AP2 148 209 IPR001471 GO:0003700|GO:0006355
Lal17g1320 357 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Lal17g1320 357 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1320 Lal-Chr17 14444373 14448387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1320 46 211 AP2-EREBP Transcription Factor Family AT5G57390 69.822 7.68e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal17g1320 AP2 3.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1320 K09285 - gmx:100804555 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1320 17 14444373 14448387 Lal17g1320 17 14444373 14448387 ECH