Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1252 ATGTCCTCACCGACCACCGTCGTGGTTCTAGACAATGGCGGGGGTCTAATCAAAGCCGGCCTTGGCGGCGAACGTGATCCCTCCACCATTCTCCCAAACTGCCTGTACCGCTCCCCCGCCTCCAAAAAATGGCTCCACCCAAACCCCCTCCCCACAACCACCACAACAACCCCAACCACCGAACCGGACCTAACCTCCGCCGCAGTTCGCCGCCCCATCGACCGAGGCTATCTAATAAACCCAGACCTCCAGCGCGAAATCTGGTCCCACCTCTTCTCCTCAATCCTCCGCATAAACCCTTCCCACTCCTCCCTCCTCCTCACCGAACCCCTCTTCACTCTCCCCTCCATTCAGCGCTCCCTCGATGAGCTCGTATTCGAAGATTTCAACTTTAACTCTCTCTACATTGCTGACTCTCCTTCCTTAGTCCATCTCTACGAGGCTAGCCGCAGGCCCGATACACTCGTGTCTCGGGCCCAGTGCAGCCTCGTAGTGGACTGTGGATTCTCATTTACTCACGCATCTCCCGTTTTCCAAAATTTTACTCTTAATTACGCTGCCAAGAGGATCGATTTGGGTGGGAAAGCGCTCACTAATTACCTTAAGGAGCTTGTGTCTTTTCGGGCTGTTAATGTAATGGAAGAGACTTTCATTATGGATGATGTCAAAGAGAAGCTTTGCTTTGTTTCCCTCGATGTTCCTCGTGACCTCCACATTGCGAGCATGGCCGCCTCAATGGCAGGAGCGAGTCTAGTGCCGCAAGGTAGAGCAGATGAAGGGCGGTCTGGCAATGCAGGCATCAGGTGGTTTGGCACTGTAGAATTATGCATTGGCGGTAAAAATGGATTTCAAATGTTGGTTTATAGGAATCGGGGAAAAGAGAATCTCTTCAGGTCCACATATGTGCTTCCAGATGGTGTTACACACATGAAGGGCTTTGTTAAATATCCAGAACAAGCACGCAGATATCTCTCTTTGGCAGATGGTGGACTTTCTCATCCTCTGGAGGAAGATATGAATTGTCTGGAATTTGCTCAGCATCCTGAGGAGAGAAAGACGGAATTTGACTTGACAAATGAACGGTTTCTTGTCCCAGAGATGATCTTCCACCCTGCAGATTTAGGAATGAACCAGGCTGGGCTAGCAGAATGCATTGTACGAGCCGTGAATTCATGCCATCCACACCTCCACCCTGTACTCTATGAAAGCATTATTTTAACTGGTGGAAGCACCTTATTTCCTCAATTTGCTGCAAGACTAGAGAAGGAGCTTCGGCCTCTAGTTCCTGCTGACTATAATGTGAAAATAACTGCTCAAGAAGATCCAATATTAGGCGTTTGGCGTGGAGGTTCATTGTTGGCATCAAGTCCCGATTTTGAAGCAATGTGTGTGACCAAGTCTGAGTATGAGGAACATGGTTCTGCTAGGTGTCACAAAAGATTCTTTCATTAA 1452 0.4917 MSSPTTVVVLDNGGGLIKAGLGGERDPSTILPNCLYRSPASKKWLHPNPLPTTTTTTPTTEPDLTSAAVRRPIDRGYLINPDLQREIWSHLFSSILRINPSHSSLLLTEPLFTLPSIQRSLDELVFEDFNFNSLYIADSPSLVHLYEASRRPDTLVSRAQCSLVVDCGFSFTHASPVFQNFTLNYAAKRIDLGGKALTNYLKELVSFRAVNVMEETFIMDDVKEKLCFVSLDVPRDLHIASMAASMAGASLVPQGRADEGRSGNAGIRWFGTVELCIGGKNGFQMLVYRNRGKENLFRSTYVLPDGVTHMKGFVKYPEQARRYLSLADGGLSHPLEEDMNCLEFAQHPEERKTEFDLTNERFLVPEMIFHPADLGMNQAGLAECIVRAVNSCHPHLHPVLYESIILTGGSTLFPQFAARLEKELRPLVPADYNVKITAQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEEHGSARCHKRFFH 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1252 483 Pfam Actin 4 482 IPR004000 -
Lal17g1252 483 PANTHER ACTIN-RELATED PROTEIN 6 8 479 IPR030054 GO:0005634|GO:0006338
Lal17g1252 483 Gene3D - 339 438 - -
Lal17g1252 483 CDD NBD_sugar-kinase_HSP70_actin 8 204 - -
Lal17g1252 483 ProSitePatterns Folylpolyglutamate synthase signature 2. 16 31 IPR018109 GO:0004326|GO:0005524|GO:0009396
Lal17g1252 483 PANTHER ACTIN 8 479 IPR004000 -
Lal17g1252 483 SUPERFAMILY Actin-like ATPase domain 3 143 IPR043129 -
Lal17g1252 483 SUPERFAMILY Actin-like ATPase domain 160 482 IPR043129 -
Lal17g1252 483 SMART actin_3 5 482 IPR004000 -
Lal17g1252 483 Gene3D - 439 480 - -
Lal17g1252 483 Gene3D - 5 174 - -
Lal17g1252 483 Gene3D Actin; Chain A, domain 4 192 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1252 Lal-Chr17 13644059 13647926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1252 360 482 Cytoskeleton Gene Families AT3G18780 37.398 9.03e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1252 K11662 - gmx:100819827 665.996