Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1246 ATGGGTTATAATCCTAAAATCTCTCTTCCTAAAATTAAAATTAAGTATATATACTCTTCTCAAATCCCATCAGATGAGAGACTCCTAATTGAAGAAATTATTCCAATTGGAAAAGGAGCTGCAAAACTATATGCAACCATTAAATTAGGCAATGCTATAGTTGCTAGAACTAGAGTTATAAAAAAGAAACACACTCAGATACAGTGGCATGAATCTTTTCAAATTTATACTGCTCACACTGCAAACAATGTTGTGTTTTCTATCAAAGAAGATCATCCAATTAGGGCAACAATTGGGAGAGCTTATTTTCCCATTGAAGAATTAGTACATGGACAAAAACTTGATAAGTGGCTTCAAATCTTGAACAAGAAAAATAAACCTCTACAAGGAGGTCCTAGAATTCATGTAAGGTTACAGTTTTTTTGTGCCACTAAGGACATTAATTGGTCTCAAGGGATTAAAAGTCCTATGTATACTGGAGTGCCAAACACATACTTCAACCAGAGAAGTGGTTGTAGGGTTACACTTTACCAGGATACTCATATTCTAGACAATTATTTACCCAAAATTTCACTCACTGGGGGCAATTACTATGAGTCACATAATTGCTGGGAAGATATTTTTGATGCCATTTCAAATGCAAAGCATTTGATATATATAGCAGGTTGGTCTGTTAACACCAAAACCACTTTAATAAGGGAGTTGAGTGTGAAAATTGTAAGAGGAGACTTGAGTTATTTGACCCTTGGTGAACTTCTTAAGAAAAAGGCTGATGAAGGAGTTAAAGTACTAATGCTTGTTTGGGATGACAGAACTTCAATTAAGTTTCTAAAGAAAGATGGGTTGATGGCTACTCATGATTTGGATACAGAAAGTTACTTCCTTGGCTCTAAAGTGCATTGTGTATTATGCCCTAGAAATCCCGAAAATGGCGAAAGCATTGTTCAAGATTTGGAGGTTGCTACCATGTTTACACATCACCAGAAGATTGTTGTAGTTGATGGTGAGAATCATGATGGGAACATAGAGAGTAGGAGAAGAATTTTAAGCTTCATTGGTGGTATTGACCTATGTGATGGAAGATATGATACTCCATTGCATTCTATTTTCAAGACACTAGGAACAACACATCATAATGATTTTCATCAACCAAATTTCAAAGGTGCATCAATTGCTAAAGGTGGACCAAGAGAACCTTGGCATGACATACATTGCAGGTTAGAAGGACCTATTGCATGGGATGTTCTCATTAATTTTGAACAAAGGTGGAAAAAGCAAGGTAAGAAGAATGTTTCACTTGTTCAACTTGATGATATCTTCATACCTCAAGCACAAGAGATTTTCCCTGAAGACAAAGAAACATGGAATGTTCAGTTGTTTCGATCCATAGATGGAGGAGCAGCTTATGGCCTCTCAAATACTCATGAGGATGCAGCCAGGTATGGTCTTCTGACCTGTGAAGGTCAAGTGATTGAGCACAGCATCCAAGATGCATATATTAATGCCATAAGAAGAGCTAAAAACTTTATCTATATTGAAAACCAATATTTCCTTGGAAGCTCTTTTAGTTGGAATTCAGATGATCTTCAAGTTGAGGAGGTAGGAGCATTGCATCTGATTCCAAAGGAACTATCTCTAAAAATTGTTAGTAAGATTGAAGCAGGAGAGAGATTTAATGTCTACATAGTAATTCCAATGTGGCCTGAAGGTGTTCCTGAAAGTGCATCTGTTCAGAGCATACTGAATTGGCAAAAAAGGACAATGGATATGATGTATACAGATATAGTTAAGGCTCTACAAGCCAAAGGAATTAGGATTGACCCTAAGGACTATTTGAGTTTCTTTTGCCTTGGAAATAGAGAGAAGAAGGTTAATGGAGAATATGAACCTTCTAAAGAGCCAGATCAAAAATCAGATTACTTTAGAGCTCAACAAGCAAGGAGGTTCATGATCTATGTCCATGCCAAAATGATGATAGGTAGCTTTATCTACTACAATCCTGCTGCAAATTCTTCATGTTTGTCACTAATTTATCATTTTTTGATTGGATTGGGACATGATGGGACATCAAATATTGGGACAGTTGACGACGAATACATAATTATTGGATCTGCTAACATCAATCAGAGGTCAATGGATGGAGCTAGGGACACAGAGATTGCCATGGGAGGCTACCAACCATATCACTTATCAACAAATCAGCCAACCAAGGGTCAGATTCTTGGCTTAAGAATGGCATTGTGGTTTGAGCATTTAGGGTTTCTTGATGACTCATTTTTTACACCAGAGAGGTTGGAATGTGTTAGAAAAATAAACCAGATTTCTGAAAGCTATTGGGACCTTTATTGTAGTGAGATTCTAGAGAATGACTTGCTTGGTCATTTGCTTAGTTATCCCATTAAAGTTACTGAAAATGGAGAGGTCACAACCTATCCTGGTATGGAGTATTTTCCAGACACAAAGGCACGAATTCTTGGGTCCAAATCAGAACTTCCAATGATCTTAACTACATAA 2514 0.3687 MGYNPKISLPKIKIKYIYSSQIPSDERLLIEEIIPIGKGAAKLYATIKLGNAIVARTRVIKKKHTQIQWHESFQIYTAHTANNVVFSIKEDHPIRATIGRAYFPIEELVHGQKLDKWLQILNKKNKPLQGGPRIHVRLQFFCATKDINWSQGIKSPMYTGVPNTYFNQRSGCRVTLYQDTHILDNYLPKISLTGGNYYESHNCWEDIFDAISNAKHLIYIAGWSVNTKTTLIRELSVKIVRGDLSYLTLGELLKKKADEGVKVLMLVWDDRTSIKFLKKDGLMATHDLDTESYFLGSKVHCVLCPRNPENGESIVQDLEVATMFTHHQKIVVVDGENHDGNIESRRRILSFIGGIDLCDGRYDTPLHSIFKTLGTTHHNDFHQPNFKGASIAKGGPREPWHDIHCRLEGPIAWDVLINFEQRWKKQGKKNVSLVQLDDIFIPQAQEIFPEDKETWNVQLFRSIDGGAAYGLSNTHEDAARYGLLTCEGQVIEHSIQDAYINAIRRAKNFIYIENQYFLGSSFSWNSDDLQVEEVGALHLIPKELSLKIVSKIEAGERFNVYIVIPMWPEGVPESASVQSILNWQKRTMDMMYTDIVKALQAKGIRIDPKDYLSFFCLGNREKKVNGEYEPSKEPDQKSDYFRAQQARRFMIYVHAKMMIGSFIYYNPAANSSCLSLIYHFLIGLGHDGTSNIGTVDDEYIIIGSANINQRSMDGARDTEIAMGGYQPYHLSTNQPTKGQILGLRMALWFEHLGFLDDSFFTPERLECVRKINQISESYWDLYCSEILENDLLGHLLSYPIKVTENGEVTTYPGMEYFPDTKARILGSKSELPMILTT 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1246 837 PIRSF PLD_plant 20 664 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lal17g1246 837 PIRSF PLD_plant 689 837 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lal17g1246 837 PANTHER PHOSPHOLIPASE D 691 837 - -
Lal17g1246 837 PANTHER PHOSPHOLIPASE D 26 659 - -
Lal17g1246 837 ProSiteProfiles C2 domain profile. 1 118 IPR000008 -
Lal17g1246 837 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 322 361 IPR001736 GO:0003824
Lal17g1246 837 Pfam C2 domain 38 119 IPR000008 -
Lal17g1246 837 PANTHER PHOSPHOLIPASE D 26 659 IPR015679 -
Lal17g1246 837 PANTHER PHOSPHOLIPASE D 691 837 IPR015679 -
Lal17g1246 837 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 141 IPR035892 -
Lal17g1246 837 Gene3D C2 domain 29 150 IPR035892 -
Lal17g1246 837 SUPERFAMILY Phospholipase D/nuclease 144 433 - -
Lal17g1246 837 SMART pld_4 322 361 IPR001736 GO:0003824
Lal17g1246 837 SMART pld_4 686 711 IPR001736 GO:0003824
Lal17g1246 837 Gene3D Endonuclease Chain A 191 445 - -
Lal17g1246 837 Gene3D Endonuclease Chain A 473 659 - -
Lal17g1246 837 Pfam Phospholipase D C terminal 756 828 IPR024632 -
Lal17g1246 837 SMART C2_3c 11 117 IPR000008 -
Lal17g1246 837 Pfam Phospholipase D Active site motif 322 361 IPR001736 GO:0003824
Lal17g1246 837 SUPERFAMILY Phospholipase D/nuclease 694 768 - -
Lal17g1246 837 SUPERFAMILY Phospholipase D/nuclease 492 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1246 Lal-Chr17 13482662 13486936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1246 30 837 Phospholipase D Gene Family (Wang group) AT1G52570 61.624 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1246 K01115 - jre:109013902 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1246 17 13482662 13486936 Lal1g1258 1 13840645 13844888 ECH
Lal17g1246 17 13482662 13486936 Lal18g0208 18 1730179 1734569 ECH
Lal17g1246 17 13482662 13486936 Lal25g0255 25 1742980 1746842 ECH
Lal17g1246 17 13482662 13486936 Lal4g0220 4 1381520 1385964 ECH
Lal17g1246 17 13482662 13486936 Lal17g0232 17 1441637 1445151 ECH
Lal17g1246 17 13482662 13486936 Lal17g1246 17 13482662 13486936 ECH