Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1211 ATGGCATCATCATCACCAGCAGAACTAAGCCTAGATTGCAAGCCCCATAGCTATTCCATGCTTCTGAAATCATTTGGAGATCATCAAAGTGATCAATGGAACAAGCTTGAAGAGTTCCTTTCTCGCTTAGAGGAAGAACGTCTCAAGATTGACGCATTCAAGCGTGAGCTTCCTCTATGCATGCAACTCCTCACCAATGCGGTGGAGGCTTCAAAGCAGCAACTTCATGCCTTCAGAACAAACCATCAAGTTATTACAAGGCCTGTTATGGAAGAATTCATACCCATAAAACAATCAAACTCTGAAGAAAACACAGACAAAGCATCAAACATGTTTGATAATAAGGCCAATTGGATGACATCTGCTCAACTATGGAGCCAAGCAAGCGAAGGAATTACAAAACCACAATCAACAATTACACCCACCAAAGAATCTTATGATATTGGTTTCATGAACATGAATCCTAAGCTAGCTCTACAAAACAAACATAGGAATGGTGGAGCCTTCCTACCATTTTCAAAAGAAAGAAACTCATGTCCATTAGGTTCTTCTGCTTTAAGAGATATTCCTGAGTTGGCACTTGTATCTGGTGAGAAAGATTTGGAGGAAAAGAATTGTGAAGAGGTAGAGAAATGTTACAAGATGGAGAATTTAGAGAAAGGAGGAAATGATGAAAGGGTTATTGATCAAGGAAAAGGTGCTGAAGTTGCATGTGAGGGACAAACAACAAATGTTCCTACTAACAGGAAAGCAAGAAGGTGTTGGTCACCGGATTTGCATCGCCGGTTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCTACCCCAAAACAGATTAGGGAGTTGATGAAGGTTGATGGTTTGACTAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGAAGACCAGGTCCAAGCCTACAAACAGGTGCTCCCGCACCTCAGTTGGTAGTCCTAGGAGGAATCTGGGTCCCACCGGAATACGCCTCAGCGGCAGCTGCCTCCGCTCACACTGGCGTCCCCACCGTGTATGGACCGCACCCTACCATGCACGCGCCACCACCACACTACTGTGCTGCCACTCAATTACCCCAAGAGTTTTACACTGTAGCACAATCCCAGCCTCCGCTGCCGCCACAACCACACCACCACGCCTTTCACCACCTTCAGATGTATAATACCGCGCAAAACACCGGAAACTCTCCGGAACCCGAGCTTGCGGGAGGCGGTGACCGGTCGGAGAGCATCGAGGATGGGAAGTCGGAGAGTGGTAGCTGGAAGGGGGAGAGTGGCGAGAAGGAAGGAGAGAGAAAAGGGGAAGAGAGCACTGGTAGTGAAATCAATCTCAAGTTCTAG 1374 0.4614 MASSSPAELSLDCKPHSYSMLLKSFGDHQSDQWNKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAVEASKQQLHAFRTNHQVITRPVMEEFIPIKQSNSEENTDKASNMFDNKANWMTSAQLWSQASEGITKPQSTITPTKESYDIGFMNMNPKLALQNKHRNGGAFLPFSKERNSCPLGSSALRDIPELALVSGEKDLEEKNCEEVEKCYKMENLEKGGNDERVIDQGKGAEVACEGQTTNVPTNRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPGPSLQTGAPAPQLVVLGGIWVPPEYASAAAASAHTGVPTVYGPHPTMHAPPPHYCAATQLPQEFYTVAQSQPPLPPQPHHHAFHHLQMYNTAQNTGNSPEPELAGGGDRSESIEDGKSESGSWKGESGEKEGERKGEESTGSEINLKF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1211 457 SUPERFAMILY Homeodomain-like 248 308 IPR009057 -
Lal17g1211 457 Pfam Myb-like DNA-binding domain 252 303 IPR001005 -
Lal17g1211 457 Gene3D - 249 307 - -
Lal17g1211 457 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 457 IPR044787 GO:0003700|GO:0006355
Lal17g1211 457 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 250 305 IPR006447 GO:0003677
Lal17g1211 457 Coils Coil 36 56 - -
Lal17g1211 457 MobiDBLite consensus disorder prediction 416 451 - -
Lal17g1211 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 247 307 IPR017930 -
Lal17g1211 457 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 457 - -
Lal17g1211 457 MobiDBLite consensus disorder prediction 400 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1211 Lal-Chr17 12862864 12867311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1211 1 457 G2-like Transcription Factor Family AT2G03500 50.202 4.31e-125 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal17g1211 Myb_DNA-binding 9.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1211 - - gmx:100815048 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1211 17 12862864 12867311 Lal17g1211 17 12862864 12867311 ECH