Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1180 ATGGCTCTGTGTCAGATCCACGTCCCTTTTCGAAGCTCCTCTCGGCAGAAAATCGCAAGGTTTTCAAATACCAAGCTTCTCAGAATCAATTGTGGTTACTCCTCTTTTGAAGTTAGAGATGTTAGCTATCAGCCGCCAGGGACTCAGCTCAAGCTTCTGAATTCAGTTAGCTTTTCACTTCCAGACAAAAGTCTTGGGCTAATTTTTGGACAGAGTGGAAGTGGAAAAACAACTCTCTTGCAGCTTCTTGCAGGAATAAACAAGCCAACCTCTGGATCCATCTATACCCAAAAATTTTGGAATGATGGAAATCCTAGTCAACCCCCGGAGCCCTTGGTGCCAGAAAGGGTTGGTATCGTCTTCCAGTTTCCTGAGAGGTATTTTGTGGCTGATAGTGTGCTTGATGAAGTCACTTTTGGGTGGCCGAGGCAAAAGGATAGCTATCAACTGAGGGAGAATCTTGCACTGGGGCTTCAGAGGGCAATTAACTGGGTTGGCTTAAGTGGGTTACCGTTGGATAAAAATCCTCACTCCCTTAGTGGTGGTTACAAACGTCGTCTTGCCTTGGCAATACAATTAGTCCAAATCCCTGACCTATTGATATTAGATGAGCCTCTTGCTGGTCTTGATTGGAAAGCACGTGCCGATGTTGTGAAGCTTTTGATGAATCTAAAAAAGGAATTAACTGTGCTGGTTGTAAGCCACGATTTGAGAGAGTTCACAAGTCTAGTTGACAGATCATGGAGGATGGAAATGGGTGGCTACCTTAGAGAGGAATTGTTACCATTTTAA 792 0.4432 MALCQIHVPFRSSSRQKIARFSNTKLLRINCGYSSFEVRDVSYQPPGTQLKLLNSVSFSLPDKSLGLIFGQSGSGKTTLLQLLAGINKPTSGSIYTQKFWNDGNPSQPPEPLVPERVGIVFQFPERYFVADSVLDEVTFGWPRQKDSYQLRENLALGLQRAINWVGLSGLPLDKNPHSLSGGYKRRLALAIQLVQIPDLLILDEPLAGLDWKARADVVKLLMNLKKELTVLVVSHDLREFTSLVDRSWRMEMGGYLREELLPF 263
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1180 263 SMART AAA_5 62 254 IPR003593 -
Lal17g1180 263 PANTHER ABC TRANSPORTER I FAMILY MEMBER 11, CHLOROPLASTIC 16 259 - -
Lal17g1180 263 Gene3D - 24 261 IPR027417 -
Lal17g1180 263 CDD ABC_cobalt_CbiO_domain1 37 253 IPR015856 GO:0005524|GO:0016020|GO:0055085
Lal17g1180 263 Pfam ABC transporter 53 206 IPR003439 GO:0005524
Lal17g1180 263 PANTHER HEAVY METAL TRANSPORTER 16 259 - -
Lal17g1180 263 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 260 IPR003439 GO:0005524
Lal17g1180 263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 254 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal17g1180 Lal-Chr17 12180764 12187177 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1180 37 237 Calmodulin-binding Proteins AT2G36910 26.415 3.09e-11 61.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1180 - - vun:114196181 431.024