Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1123 ATGGAGCCCATGGACATAGTTGGAAAATCAAAGGAAGATGCTTCTCTTCCTAAAGCGACAATGACGAAAATTATTAAAGAGATGTTGCCACCAGATGTCCGTGTTGCAAGAGATACTCAAGATCTATTAATTGAGTGTTGCGTGGAGTTTATAAACCTCCTCTCATCAGAGTCCAATGAAGTCTGTAGTAGGGAAGAAAGAAGGACGATTGCACCTGAGCATGTGTTGAAGGCTTTAGGGGGTCTTGGTTTTGGTGAGTACATTGAGGAAGTTTATGCAGCATATGAACAGCACAAAGTGGAGACAATGCAGGACTCTCTAAAAGGTGCTAAGTTGAGCAACAGAGCTGAGATGACCGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCTGAGGCGCGTGCTAGAATGAATGGTGGGGCAATTCCTTCTAAGCAGCCAGATACTGACCAAAGTTTTGAGAGCTAA 471 0.4395 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLLSSESNEVCSREERRTIAPEHVLKALGGLGFGEYIEEVYAAYEQHKVETMQDSLKGAKLSNRAEMTEEEALAEQQRMFAEARARMNGGAIPSKQPDTDQSFES 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1123 156 Gene3D Histone, subunit A 4 142 IPR009072 GO:0046982
Lal17g1123 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Lal17g1123 156 MobiDBLite consensus disorder prediction 137 156 - -
Lal17g1123 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Lal17g1123 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Lal17g1123 156 Coils Coil 115 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1123 Lal-Chr17 10537698 10541940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1123 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 80.519 7.50e-89 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal17g1123 CBFD_NFYB_HMF 5.6e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1123 K21751 - gmx:547635 284.648