Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1082 ATGACTTCTACTCAATCCACTCTGTCTTCTCTCCACGACTCTCTCTCTGATGTCGATGACTACGTTTCTGCAAATGAGCTGGAAGGTTTTGCATTGGATACATTTCGTGATGTTTACGAGCTTGTGCATAATGGTAATGCAGCATTTCGAGAGAACAGAATGGAAGAGGCAATCAACTTTTACTCAAGGGCCAATAACATCAAATATGGTGATCCGATTATCCTCAGCAATCGAAGTGCAGCTTATATTAGAATTAGTCAATATTTAAAGAATAGAGCTGCATCAGCTTCAGAACAAAGACCATTGAGTGGGCTTGATCCTACAACACTTGCTGAATTAGGTTTGAAGGATGCTGATAAACTTGTTGATCTCCAAAGTAATTCAGTAAAACCATACATTTTAAAGGCCAATGCTTTATCTCTGTTGGAGAAATTTGAGGAGGCCCGAGATGTTATTCTTTCAGGCCTTCAAGTTGATCCCTTTAGTGATTCTCTTCGGACTTCTCTTCAAAATTTGGAAAGAGAGTCATGCAGATCAACTGGCACAAATACGCATGGACAACCAGAGCGAGATGATGACTTTGATTGCACTCTTTGCCTGAAGTTACTATATGAACCTGTTACAACTCCTTGTGGACATTCTTTTTGCCGATCATGTCTATTTCAAGCAATGGATTGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTGTTTTTTAGTCCTAGAACGTGTTCCATCAGTGTGACATTAAAGAACATCATAGAAAAGAACTTTCCTGAGGAATATGCTGAACGGAAGCAAGAGCATGATAGTTTAGTCAACTCTGGTGTAGATTTGCTCCCTCTATTTGTTATGGATGTTGTCATACCATGTCAAAAGTTTCCACTCAATATATTTGAACCTCGGTATAGACTAATGGTTATAATTGAGTCTTCAACAGGTTCGTTAGCCGAGTATGCTTGTGAAGTTGAAATCACAGAATGTGAGCCACTTCCTGATGGTCGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGTATCATCCGTTCTTGGGATCAAGATGGATATCGTGTTGCAGAGGTTGAATGGATACAGGATATTATGCCACCAGAAGGGACAGGAGAAAAAGAGACCTTACTGGAATTAACACAAAATGCAGCAGAAAGTGCTCGATCATGGATAAGAAGAGCTAAAGAAGCCGCAAGACATGATCAAAGAAGACTTGAGAGACTCGCGAGTGTTGAAGCAATGATGCCTTCGCTTGGAGACCCTGAGCGCTTCAGTTTTTGGGCTTCATTGCAGCTGACTACTCTTTCGAATCGGAGGCCTTCGGAAAGATTGGATCTCCTATCCATGAGAAATACTACTGAGAGGATTAGGCGAGGCCTGATATATCTCCGAGCAGAGGAACAAGGCTGCAGAATTCAATAA 1434 0.4128 MTSTQSTLSSLHDSLSDVDDYVSANELEGFALDTFRDVYELVHNGNAAFRENRMEEAINFYSRANNIKYGDPIILSNRSAAYIRISQYLKNRAASASEQRPLSGLDPTTLAELGLKDADKLVDLQSNSVKPYILKANALSLLEKFEEARDVILSGLQVDPFSDSLRTSLQNLERESCRSTGTNTHGQPERDDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQAMDCGNRCPLCRTVLFFSPRTCSISVTLKNIIEKNFPEEYAERKQEHDSLVNSGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMVIIESSTGSLAEYACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGTGEKETLLELTQNAAESARSWIRRAKEAARHDQRRLERLASVEAMMPSLGDPERFSFWASLQLTTLSNRRPSERLDLLSMRNTTERIRRGLIYLRAEEQGCRIQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1082 477 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Lal17g1082 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 276 IPR013083 -
Lal17g1082 477 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 13 470 - -
Lal17g1082 477 PANTHER RING FINGER PROTEIN 127 13 470 - -
Lal17g1082 477 Pfam Zinc finger, C3HC4 type (RING finger) 196 233 - -
Lal17g1082 477 SMART ring_2 196 233 IPR001841 -
Lal17g1082 477 Pfam ATP-dependent protease La (LON) substrate-binding domain 311 467 IPR003111 -
Lal17g1082 477 ProSiteProfiles Zinc finger RING-type profile. 196 234 IPR001841 -
Lal17g1082 477 SUPERFAMILY TPR-like 37 171 IPR011990 GO:0005515
Lal17g1082 477 SUPERFAMILY PUA domain-like 280 467 IPR015947 -
Lal17g1082 477 Gene3D Tetratricopeptide repeat domain 36 175 IPR011990 GO:0005515
Lal17g1082 477 Gene3D - 278 309 IPR046336 -
Lal17g1082 477 Gene3D - 310 367 IPR046336 -
Lal17g1082 477 SUPERFAMILY RING/U-box 190 259 - -
Lal17g1082 477 SMART lon_5 279 469 IPR003111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1082 Lal-Chr17 9512022 9521126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1082 182 237 C3H Transcription Factor Family AT1G74990 35.593 8.89e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1082 - - gmx:100802277 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1082 17 9512022 9521126 Lal17g1082 17 9512022 9521126 ECH