Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1042 ATGGGAAGAACACCTTGCTGCAATCACAAGCAAATGAAAAAGGGTGCATGGACAGTTGAAGAAGACCAGAAACTCATAACTTACATTCAGACACATGGCACAGGAAGCTGGCGTACCATGCCACAGAAAGCTGGTCTTCAAAGATGTGGAAAAAGTTGCAGGCTGAGATGGTTTAACTACCTCAGACCTGACATTAAGAGAGGACATTTAAGCGAAGAAGAAGAACAAACCATTATAAGACTACATGCTGCTCTTGGCAACAGGTGGTCAAGTATTGCCAAGCATTTGCCAATGCGGACAGACAACGAAATCAAGAACTATTGGAACTCATATTTGAAAAAACAATTAGATATTAAAGGTCTTGATACATTTAGTACCAAACCAATTTGCACTGTTAGTTCTTCATCGGATTCAGAACCTATAACTACCCAAAAATCGAAGTCCAATGACATGTACATGGTTCCATCGAAAAATATTGGCTTTCATGAACCAAACACAAATCAGGGCTCATCAAAATCAGAGTCATCTCAGCTACTGAACAAAGTTGCTAAAAAGATTGTTGGGTCAGGTTACCTTGATGCAGTAAAATCATTGCAACTTATTGCTGGGAATAACAGTAATGATGATAATATTGTCACAAAAAATGAATTAGAGTCTAAAAGTGACAGTATTATTAAGCAGTCTCATGTGCCTAATTTTAGCACCATTTCAAGTCATTCTTCAACTTCTGCTCAATTATTAAACAAAATGGCTACTTCTCTTTGTCAAAAATCTCATGTCCATGAAGCTGCAAGAGCAATGTTTTCAAAATTAATGGAAGGTGATGCAAAAAGTGAGGCTAGCACTGATGGTCTGAACCTTTTTGAGGATGAACCAAAGATAACAAGAATAATTGATTCTCCTTCTAGTCCTACACTAACATTTAACGAAGTACTTACACACTCATGCTTTTTAGATAATTGGCAATGTTTTTCATCAAATTATATATCTTTTGGAAATTGTGCTGCAAGTGGTGATGAAAGCAGTGTAATGATAAGGAGTAGCAGTTTTTGCATTGAATCCCCTAATAATTATTCTACGTTGTGCTTCTTAGATGAGAATGCACCAGCAGCTTCAGTTGCTGATAAATCAGATGATTACTTCAATGAAATTTTAATGTGTGAGGATGAAATAAGATTGGTGGCTCTAATTTTTGTTTCATTGCCAAAGTTTTTCTGGGCAAACTTGCTAGTGTTTGAGGATAAGAAAAGATATATTTGA 1260 0.3635 MGRTPCCNHKQMKKGAWTVEEDQKLITYIQTHGTGSWRTMPQKAGLQRCGKSCRLRWFNYLRPDIKRGHLSEEEEQTIIRLHAALGNRWSSIAKHLPMRTDNEIKNYWNSYLKKQLDIKGLDTFSTKPICTVSSSSDSEPITTQKSKSNDMYMVPSKNIGFHEPNTNQGSSKSESSQLLNKVAKKIVGSGYLDAVKSLQLIAGNNSNDDNIVTKNELESKSDSIIKQSHVPNFSTISSHSSTSAQLLNKMATSLCQKSHVHEAARAMFSKLMEGDAKSEASTDGLNLFEDEPKITRIIDSPSSPTLTFNEVLTHSCFLDNWQCFSSNYISFGNCAASGDESSVMIRSSSFCIESPNNYSTLCFLDENAPAASVADKSDDYFNEILMCEDEIRLVALIFVSLPKFFWANLLVFEDKKRYI 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1042 419 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal17g1042 419 Gene3D - 69 151 - -
Lal17g1042 419 CDD SANT 16 61 IPR001005 -
Lal17g1042 419 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 264 - -
Lal17g1042 419 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lal17g1042 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal17g1042 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal17g1042 419 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal17g1042 419 SMART sant 66 114 IPR001005 -
Lal17g1042 419 SMART sant 13 63 IPR001005 -
Lal17g1042 419 CDD SANT 71 112 IPR001005 -
Lal17g1042 419 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Lal17g1042 419 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal17g1042 419 Gene3D - 6 66 - -
Lal17g1042 419 PANTHER TRANSCRIPTION FACTOR MYB51 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1042 Lal-Chr17 8877135 8879657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1042 1 227 MYB Transcription Factor Family AT5G60890 46.256 3.68e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal17g1042 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1042 K09422 - gmx:100818639 414.846