Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1026 ATGGGGAGACAACCTTGCTGTGACAAAATTGGGATTAAGAAAGGGCCTTGGACTCCAGAAGAAGATATAATCTTAATCTCATACATTCAAGAACATGGACCAGGGAATTGGAGATCAATCCCTAAAAATGCAGGTCTAATGAGATGCAGTAAAAGCTGCAGACTTAGATGGACTAACTATCTTAGACCTGGTATCAAACGAGGTAACTTCACTGATCATGAGGATAAAATGATAATCCACCTTCAAGCACTTCTGGGTAACAGATGGGCTGCTATAGCTTCCTATCTTCCAGAAAGGACAGACAATGACATAAAAAACTATTGGAATACCAATTTGAAGAAAAAGTTAAAGAATCAAAATGGTTATTATAACAAAAAAGGAGACTCTTCCAATTCACAGATAAAGGGTCAATGGGAGAAAAGGCTTCAAACAAATATCCACATGGCCAAACAAGCCTTGTATGAGGCATTATCCATTGACAAACCAAGCCCTGCATCAAATGGCACACCAGTGAAACAAGCATCCTCCTATGCATCCAGCACTGAAAACATAGCCAGATTGCTCCAAAACTGGATCAAGAAATCACCAAACTCATCAGGAAATACCTTCAGCAATATGGTGACCACAGGATCTAGTTCTAGTGAAGGAGCACATAGCAGTAGTACTATTACATGCACACCACATGATCAAGCTTTTGACTCTTTCTTGAACTACAATGATGTTTACCAATCTGACAATCAATCTAAAACTGAATCTGGTTGCTCACAATATGAAGACAAACAATACTTGGAGACACAAGTCCCTCTCACGGTGCTGGAAAAGTGGCTTTTTGATGATGGACAAGTTCAATACCATGATGAAGATCTAATGAACATGTCACTAGAGGAAAATACAACTGGGTTGTTTTAG 909 0.3916 MGRQPCCDKIGIKKGPWTPEEDIILISYIQEHGPGNWRSIPKNAGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEDKMIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTNLKKKLKNQNGYYNKKGDSSNSQIKGQWEKRLQTNIHMAKQALYEALSIDKPSPASNGTPVKQASSYASSTENIARLLQNWIKKSPNSSGNTFSNMVTTGSSSSEGAHSSSTITCTPHDQAFDSFLNYNDVYQSDNQSKTESGCSQYEDKQYLETQVPLTVLEKWLFDDGQVQYHDEDLMNMSLEENTTGLF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1026 302 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal17g1026 302 CDD SANT 69 112 IPR001005 -
Lal17g1026 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lal17g1026 302 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal17g1026 302 PANTHER TRANSCRIPTION FACTOR MYB30 1 283 - -
Lal17g1026 302 SMART sant 66 114 IPR001005 -
Lal17g1026 302 SMART sant 13 63 IPR001005 -
Lal17g1026 302 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal17g1026 302 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal17g1026 302 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal17g1026 302 CDD SANT 16 61 IPR001005 -
Lal17g1026 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lal17g1026 302 Gene3D - 69 161 - -
Lal17g1026 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 283 - -
Lal17g1026 302 Gene3D - 13 66 - -
Lal17g1026 302 MobiDBLite consensus disorder prediction 199 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1026 Lal-Chr17 8532458 8534390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1026 1 302 MYB Transcription Factor Family AT5G62470 47.253 1.98e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal17g1026 Myb_DNA-binding 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1026 K09422 - gmx:100794319 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1026 17 8532458 8534390 Lal17g1026 17 8532458 8534390 ECH