Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1004 ATGGAATTACGTAGCGGATTCCCTCTTTTCCTTCAACAATTCAAATCACTCTTAAAAAAGAACCTACTCCTTTCATGGCGAAACAAGAGGGCCACACTCCTTCAAATTCTCTCTCCTCTTTTCTTCATTTTCCTCATCTTCGCCATTGACCGCGCCATTCGCGCTAATAACTTGACTTCAACTATATATAAAAGCATCAAAGATCCTCCTGCGATTCCTATCTCTCCCATTCTTCCTTGCGAGGAAAAATTCTTCATCAAACGCCCTTGCTATGATTTCCTTTGGAGTGGCGATGATAACCCCAAATTTCACACCATTGTTAAGTCTTTTAAAGATAAGTATGAAGTGGATGCTTGGCTTTTAAGCAATCCTTTGCGATGTCCTGGAGCTATTCATTTTAGGGAGAAGAATGATAGCGTTATTAGCTATGGTTTACAGACAAATTCAACTACTGTTCAAAAGCGAGGGCACTATGAAGATTCTGCTAATAAATTTCAACTTCCGCTTCAGCTTGCTGCAGAACGTGAAATTGCGAGATATTTGATTAGAGATCCAAACTTCAGTTGGAATGTGAATTTGAAGGAATTCGCGCACCCGGCCGAGCCACCACCTTTCTCTTCAGTGGGTCTAATAGGTCCATCATTTTTCCTTGCAATTGCCATGTTTAATTTTGTTCTTCAGATGAGCTCTTTGGTGACAGAAAAAGAGCTTAAACTTCGCCAGGCAATGTCTATGATGGGCCTTTACGACTCTGCTTACTGGTTATCATGGCTCACATGGGAGACAGTCATTACACTAATATCATCCCTTCTCATAGTTCTCTTTGGAATGATGTTCCAGTTTCCTTTTTTCTTGAAAAACAGTTTTGGGATCCTGTTCTTTCTCTTCTTCCTATTTGAACTCAGTATGACTGGATTAGCTTTCATGTTGTCTGCTTTCATTCGTAAATCATCTTCAGCAACAACAGCGGGGTTCTCCATATTTATTATTGTTGTAGGAGCAGGAATTCCTTATTATTTCGGCTTTTCCAAGACTTTCCGAATTATCTGGTCATTCTTCCCGCCCAATACTTTTGCTCAAGCTTTACAAGTGCTTTCAAGTGCAGTACAAACTCCTGAAGATCAGGGTATTAGGTGGAGTAATCGGGGAAATTGCGGTGCTGAACCGTCCTGTTATTTGACAATTAATGGTATTTATAAATGGCTGCTGGGTACATTCTTCCTGTGGTTTGTTCTGGCCATCTACTTCGACAACATAATCCCAAATGCATCTGGAGTGAGGAAATCAATTTTTTACTTTCTACATCCCAGCTATTGGGTGGGAAAAGGAGGACAAAAAGTGAAAGAGGGTGGGGTTTGTAGTTGCTTAATCTCAGCCCCACATGAAGAGCATAGCTTACCAGATGATGAAGATGTCCGTCAAGAAGAAAACATTGTAAAACATCAACTAGCAGAAGGTGTGGTTGATGATAATGTTGCTGTTCAGATACATGGTCTTTCAAAGACATATCCTGGTACAATTAACATTGGTTGCTGCTCTAAATGTAAAAGAACTCCTCCTTACAGTGCTCTTAAGGGTTTATGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTTTAGGACCCAATGGAGCTGGGAAAACAACAGCTATTAGTTGTTTGACAGGGATAACTCCAGTAACTAATGGAGATGCATTGATTTATGGACATTCCATCCGAAGCCCCAATGGAATGTCAAACATTCGGAAGTTAATAGGATTTGATATCCTATGGGACGCACTGAGCGGTGAAGAACACCTTCAACTCTTTGCTACTATCAAAGGCCTGTCCCCAAATTCCATCAAATCAGTTACCCAGACATCATTGGAAGAGGTGAGACTCACAGAAGCTTCCAAAGTGAGAGCAGGAAGTTACAGTGGAGGAATGAAACGTCGCCTCAGTGTTGCGATTGCCCTTATTGGTGACCCTAAATTAGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATAACAAGGAGGCATGTGTGGGACATAATAGAAAATGCAAAAAAAGGGCGTGCCATTATTCTCACAACACACTCTATGGAAGAAGCTGACATTCTAAGTGATCGCATAGGAATCATGGCAAAGGGTAGGCTTCGCTGCATTGGCACCTCCATCCGACTGAAGTCACGCTTTGGTTCTGGCTTTATTGCAAATATCAGCTTCAATGGAAACAATGTTGACCATAGTCCTGCCGATGGAGATGCAGTTTCTACAACACATCGTGAGGCTGTGAAACAGTTCTTTAAGAATAGTTTGAATGTAAAGCCAAAAGAGGAGAATAATAAGTTTCTAACTTTTGTGATTCCTCATGACAGAGAGGGGCTTCTGATGAATTTTTTTGCAGAGCTCCAATATAGAGAAGTAGAATTTGGCATATCTGATATCCAGCTTGGTCTAACAACTCTTGAAGAAGTTTTCCTGAATATTGCTAAGCAAGCAGAGCTAGAAAGTGCTGAAGCTGAAGGGAGCCTAGTGACACTAAGCTTAACATCCGGAGGGTCTGTCGAGGTTCCTAAAGGAGCAAGGTTTGTGGGGATTCCAGGAACACAGTCTACTGAAAGCCCCACAGGGTATATGGTAGAAGTATACTGGGATCAAGATGATACCGGTGCTCTATGTATTTCCGGCCACTCGCAAAAAGTTCCAATTCCTTCCGGCATCGAACTACCATCTGCTCCTGCCACAAGAAATCACAGAAGGTCAGGCAAGTCAGTTCATGGGTTTGTGATCGATCCAAGTCTAGTTAGTGCAGTCAATTTTCAATGA 2814 0.4165 MELRSGFPLFLQQFKSLLKKNLLLSWRNKRATLLQILSPLFFIFLIFAIDRAIRANNLTSTIYKSIKDPPAIPISPILPCEEKFFIKRPCYDFLWSGDDNPKFHTIVKSFKDKYEVDAWLLSNPLRCPGAIHFREKNDSVISYGLQTNSTTVQKRGHYEDSANKFQLPLQLAAEREIARYLIRDPNFSWNVNLKEFAHPAEPPPFSSVGLIGPSFFLAIAMFNFVLQMSSLVTEKELKLRQAMSMMGLYDSAYWLSWLTWETVITLISSLLIVLFGMMFQFPFFLKNSFGILFFLFFLFELSMTGLAFMLSAFIRKSSSATTAGFSIFIIVVGAGIPYYFGFSKTFRIIWSFFPPNTFAQALQVLSSAVQTPEDQGIRWSNRGNCGAEPSCYLTINGIYKWLLGTFFLWFVLAIYFDNIIPNASGVRKSIFYFLHPSYWVGKGGQKVKEGGVCSCLISAPHEEHSLPDDEDVRQEENIVKHQLAEGVVDDNVAVQIHGLSKTYPGTINIGCCSKCKRTPPYSALKGLWVNFAKDQLFCLLGPNGAGKTTAISCLTGITPVTNGDALIYGHSIRSPNGMSNIRKLIGFDILWDALSGEEHLQLFATIKGLSPNSIKSVTQTSLEEVRLTEASKVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKKGRAIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGSGFIANISFNGNNVDHSPADGDAVSTTHREAVKQFFKNSLNVKPKEENNKFLTFVIPHDREGLLMNFFAELQYREVEFGISDIQLGLTTLEEVFLNIAKQAELESAEAEGSLVTLSLTSGGSVEVPKGARFVGIPGTQSTESPTGYMVEVYWDQDDTGALCISGHSQKVPIPSGIELPSAPATRNHRRSGKSVHGFVIDPSLVSAVNFQ 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1004 937 Pfam ABC-2 family transporter protein 31 415 - -
Lal17g1004 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 732 IPR027417 -
Lal17g1004 937 Pfam ABC transporter 525 665 IPR003439 GO:0005524
Lal17g1004 937 Gene3D - 483 744 IPR027417 -
Lal17g1004 937 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 494 736 IPR003439 GO:0005524
Lal17g1004 937 CDD ABC_subfamily_A 494 724 - -
Lal17g1004 937 ProSitePatterns ABC transporters family signature. 638 652 IPR017871 GO:0005524
Lal17g1004 937 SMART AAA_5 533 713 IPR003593 -
Lal17g1004 937 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 7 906 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lal17g1004 937 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 7 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1004 Lal-Chr17 8162407 8169127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1004 519 757 Calmodulin-binding Proteins AT2G36910 22.519 1.45e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1004 - - gmx:100786538 1384.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1004 17 8162407 8169127 Lal17g1004 17 8162407 8169127 ECH