Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1000 ATGGAGTTTGATTCAGAAAGATCTGATCATGGTTGTGGTGAAGTCAAAGATGAGAGGAGAAGTGACTCTGGTGTTGGTGATGAGACTCATGTTATCAAGGAATCACCCATGACTAATACCAAAAGAACCATTCCAGAGGATGGACCAAGTGCATCCACAAACAAAAAGGAAGAGGTTGATGAAATTGAAAAGGCCAAAGCCAAAATGAGTGAAGTGAGAGAAGAAAATGAAAGGTTAAAGATATGTTTGAACCGAGTCATGAATGATTATAGAACACTACAAGTGCATATCCAAAATATTACTCAACAAGAGACACAAAATTCATCTCATAAAGAAAATAACAACCTTGAAGAAATAATAAAGGAATCAGAGTTAGTTTCCCTTAGTCTTGGAAATTTTCCAAGTAATCCAAGAAACGATGAGAAAGGTAAAACACAAGTGAAGGAGAAAGAATATGAAGACTTATCCCTTGGATTAGACTGCAAATTTGAAATATCAAAATCAGCAACTGAACATTTGTTAAAGCCAAGCCCTGAAAACAGTTCTGAAGTACCAAAGGAAGAAGAAGTGGATGAAGTTTCACAAGAAAATCCTGCAAAGAAAACTAGAGTTTGTGTAAGAGCAAGATGTGACACCCCAACGTTGAATGATGGATGTCAATGGAGGAAATATGGACAGAAGATTTCAAAGGGAAATCCTTGCCCTAGAGCTTATTATCGGTGCACAGTTGCACCATCATGCCCAGTACGAAAACAGGTGCAAAGATGTGTTCAAGACATGTCCATTTTAATCACAACCTATGAAGGAACACACAATCACTCTCTTCCTCTCTCAGCCACAGCCATGGCTTCAGCAACTTCTGCAGCTGCTTCCATGTTATTGAATGGTTCATCAACCTCTCACTATTCCTCAATGCCTCCTTCATCAGCCACAACTACCACTTCTTCTGATCTTCATGGCTTGAACTTATACTTACCAAATGATGGTTCCAAACCAAAACAATTCTATTTGTCACATCCTACACTCTCAATATCCTCAACTTCACAATCACACCCTACAGTTACTCTTGACCTCACTACTTCAAATATTCCACTTTCTAATTCCACATCAGATCCTAACTTTGGTGCTAGGTTATTTACTTCTTCAAACTATAACCCCATAACAAGACCATTATTATATCCTTCTTCCACAAGCCTCAACTTCACTTCTTCTGAATCCAATGCAATGTCTTGGAGCAATGGCTTCCTCAGCTACAATGGACAACCATATAGTAATAATAACAACAGGAACAATATCCTTAGCAATATAAACAACCTTGGGCGACAACCAATGGAAAATATGTACCATTCCTACATGCAAAGGAACAACATCAATGCTTCAATCCCTCATCAAGGAACTACTCAACATTCTATGCCAGATACTATAGCTGCAGCAACTAAATTCATCATAGCTGATCCTAGTTTTCAGTCATCTTTGGCAGCAGCACTTACTTCAATCATTGGCACTGGAAATACTCAAGGAAACGAGAGTAGTGGAGAAGATTCGGGTAAGAATAAGAAATGGGGTGACTTGTTTCCATCATCTTCTAGTAGAGACAACAACAATTAA 1608 0.3843 MEFDSERSDHGCGEVKDERRSDSGVGDETHVIKESPMTNTKRTIPEDGPSASTNKKEEVDEIEKAKAKMSEVREENERLKICLNRVMNDYRTLQVHIQNITQQETQNSSHKENNNLEEIIKESELVSLSLGNFPSNPRNDEKGKTQVKEKEYEDLSLGLDCKFEISKSATEHLLKPSPENSSEVPKEEEVDEVSQENPAKKTRVCVRARCDTPTLNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCVQDMSILITTYEGTHNHSLPLSATAMASATSAAASMLLNGSSTSHYSSMPPSSATTTTSSDLHGLNLYLPNDGSKPKQFYLSHPTLSISSTSQSHPTVTLDLTTSNIPLSNSTSDPNFGARLFTSSNYNPITRPLLYPSSTSLNFTSSESNAMSWSNGFLSYNGQPYSNNNNRNNILSNINNLGRQPMENMYHSYMQRNNINASIPHQGTTQHSMPDTIAAATKFIIADPSFQSSLAAALTSIIGTGNTQGNESSGEDSGKNKKWGDLFPSSSSRDNNN 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1000 535 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 35 513 IPR044810 GO:0003700
Lal17g1000 535 Pfam WRKY DNA -binding domain 216 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal17g1000 535 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 35 513 - -
Lal17g1000 535 Gene3D WRKY domain 199 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal17g1000 535 MobiDBLite consensus disorder prediction 172 198 - -
Lal17g1000 535 MobiDBLite consensus disorder prediction 36 50 - -
Lal17g1000 535 ProSiteProfiles WRKY domain profile. 210 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal17g1000 535 Coils Coil 55 82 - -
Lal17g1000 535 MobiDBLite consensus disorder prediction 503 535 - -
Lal17g1000 535 MobiDBLite consensus disorder prediction 1 68 - -
Lal17g1000 535 SUPERFAMILY WRKY DNA-binding domain 208 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal17g1000 535 MobiDBLite consensus disorder prediction 181 198 - -
Lal17g1000 535 SMART WRKY_cls 215 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal17g1000 535 MobiDBLite consensus disorder prediction 51 68 - -
Lal17g1000 535 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1000 Lal-Chr17 8106561 8113683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1000 4 501 WRKY Transcription Factor Family AT1G18860 38.230 4.14e-76 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal17g1000 WRKY 3.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1000 - - gmx:100804403 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1391 24 15299874 15303641 Lal17g1000 17 8106561 8113683 ECH
Lal6g0866 6 5888441 5892309 Lal17g1000 17 8106561 8113683 ECH
Lal17g1000 17 8106561 8113683 Lal17g1000 17 8106561 8113683 ECH