Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal17g1000 | ATGGAGTTTGATTCAGAAAGATCTGATCATGGTTGTGGTGAAGTCAAAGATGAGAGGAGAAGTGACTCTGGTGTTGGTGATGAGACTCATGTTATCAAGGAATCACCCATGACTAATACCAAAAGAACCATTCCAGAGGATGGACCAAGTGCATCCACAAACAAAAAGGAAGAGGTTGATGAAATTGAAAAGGCCAAAGCCAAAATGAGTGAAGTGAGAGAAGAAAATGAAAGGTTAAAGATATGTTTGAACCGAGTCATGAATGATTATAGAACACTACAAGTGCATATCCAAAATATTACTCAACAAGAGACACAAAATTCATCTCATAAAGAAAATAACAACCTTGAAGAAATAATAAAGGAATCAGAGTTAGTTTCCCTTAGTCTTGGAAATTTTCCAAGTAATCCAAGAAACGATGAGAAAGGTAAAACACAAGTGAAGGAGAAAGAATATGAAGACTTATCCCTTGGATTAGACTGCAAATTTGAAATATCAAAATCAGCAACTGAACATTTGTTAAAGCCAAGCCCTGAAAACAGTTCTGAAGTACCAAAGGAAGAAGAAGTGGATGAAGTTTCACAAGAAAATCCTGCAAAGAAAACTAGAGTTTGTGTAAGAGCAAGATGTGACACCCCAACGTTGAATGATGGATGTCAATGGAGGAAATATGGACAGAAGATTTCAAAGGGAAATCCTTGCCCTAGAGCTTATTATCGGTGCACAGTTGCACCATCATGCCCAGTACGAAAACAGGTGCAAAGATGTGTTCAAGACATGTCCATTTTAATCACAACCTATGAAGGAACACACAATCACTCTCTTCCTCTCTCAGCCACAGCCATGGCTTCAGCAACTTCTGCAGCTGCTTCCATGTTATTGAATGGTTCATCAACCTCTCACTATTCCTCAATGCCTCCTTCATCAGCCACAACTACCACTTCTTCTGATCTTCATGGCTTGAACTTATACTTACCAAATGATGGTTCCAAACCAAAACAATTCTATTTGTCACATCCTACACTCTCAATATCCTCAACTTCACAATCACACCCTACAGTTACTCTTGACCTCACTACTTCAAATATTCCACTTTCTAATTCCACATCAGATCCTAACTTTGGTGCTAGGTTATTTACTTCTTCAAACTATAACCCCATAACAAGACCATTATTATATCCTTCTTCCACAAGCCTCAACTTCACTTCTTCTGAATCCAATGCAATGTCTTGGAGCAATGGCTTCCTCAGCTACAATGGACAACCATATAGTAATAATAACAACAGGAACAATATCCTTAGCAATATAAACAACCTTGGGCGACAACCAATGGAAAATATGTACCATTCCTACATGCAAAGGAACAACATCAATGCTTCAATCCCTCATCAAGGAACTACTCAACATTCTATGCCAGATACTATAGCTGCAGCAACTAAATTCATCATAGCTGATCCTAGTTTTCAGTCATCTTTGGCAGCAGCACTTACTTCAATCATTGGCACTGGAAATACTCAAGGAAACGAGAGTAGTGGAGAAGATTCGGGTAAGAATAAGAAATGGGGTGACTTGTTTCCATCATCTTCTAGTAGAGACAACAACAATTAA | 1608 | 0.3843 | MEFDSERSDHGCGEVKDERRSDSGVGDETHVIKESPMTNTKRTIPEDGPSASTNKKEEVDEIEKAKAKMSEVREENERLKICLNRVMNDYRTLQVHIQNITQQETQNSSHKENNNLEEIIKESELVSLSLGNFPSNPRNDEKGKTQVKEKEYEDLSLGLDCKFEISKSATEHLLKPSPENSSEVPKEEEVDEVSQENPAKKTRVCVRARCDTPTLNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCVQDMSILITTYEGTHNHSLPLSATAMASATSAAASMLLNGSSTSHYSSMPPSSATTTTSSDLHGLNLYLPNDGSKPKQFYLSHPTLSISSTSQSHPTVTLDLTTSNIPLSNSTSDPNFGARLFTSSNYNPITRPLLYPSSTSLNFTSSESNAMSWSNGFLSYNGQPYSNNNNRNNILSNINNLGRQPMENMYHSYMQRNNINASIPHQGTTQHSMPDTIAAATKFIIADPSFQSSLAAALTSIIGTGNTQGNESSGEDSGKNKKWGDLFPSSSSRDNNN | 535 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal17g1000 | 535 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 35 | 513 | IPR044810 | GO:0003700 | |
Lal17g1000 | 535 | Pfam | WRKY DNA -binding domain | 216 | 273 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lal17g1000 | 535 | PANTHER | WRKY TRANSCRIPTION FACTOR 61-RELATED | 35 | 513 | - | - | |
Lal17g1000 | 535 | Gene3D | WRKY domain | 199 | 277 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lal17g1000 | 535 | MobiDBLite | consensus disorder prediction | 172 | 198 | - | - | |
Lal17g1000 | 535 | MobiDBLite | consensus disorder prediction | 36 | 50 | - | - | |
Lal17g1000 | 535 | ProSiteProfiles | WRKY domain profile. | 210 | 276 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lal17g1000 | 535 | Coils | Coil | 55 | 82 | - | - | |
Lal17g1000 | 535 | MobiDBLite | consensus disorder prediction | 503 | 535 | - | - | |
Lal17g1000 | 535 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
Lal17g1000 | 535 | SUPERFAMILY | WRKY DNA-binding domain | 208 | 276 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lal17g1000 | 535 | MobiDBLite | consensus disorder prediction | 181 | 198 | - | - | |
Lal17g1000 | 535 | SMART | WRKY_cls | 215 | 275 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lal17g1000 | 535 | MobiDBLite | consensus disorder prediction | 51 | 68 | - | - | |
Lal17g1000 | 535 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal17g1000 | Lal-Chr17 | 8106561 | 8113683 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal17g1000 | 4 | 501 | WRKY Transcription Factor Family | AT1G18860 | 38.230 | 4.14e-76 | 248 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Lal17g1000 | WRKY | 3.9e-23 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal17g1000 | - | - | gmx:100804403 | 546.969 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal24g1391 | 24 | 15299874 | 15303641 | Lal17g1000 | 17 | 8106561 | 8113683 | ECH | |
Lal6g0866 | 6 | 5888441 | 5892309 | Lal17g1000 | 17 | 8106561 | 8113683 | ECH | |
Lal17g1000 | 17 | 8106561 | 8113683 | Lal17g1000 | 17 | 8106561 | 8113683 | ECH |