Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0974 ATGGTAAAGTCTTCATGTTGTGAAAAAATCAGTGTCAAAAGGGATCTATGCAGTGTAGAAGAAGATGCAAAGAGACACTCATTTGTCTCAAAGAATAATGGATCTGGTAACTTCACTTTTGACTCCAAGAAAGCAGGGCTTAAGAGGTGTGGAAAGAGTTGCAGACTTAGGTGGAATAACTATCTGAGGCCAGATCTTAAGCATGATAACTTCACCTCTCAAGAAGAAGATTTAATCATTAAGCTTCATGCAGCCATAGGTAGCAGGTGGTCTATAATATCCCAACAACTACCTGGGAAAACAGACAATGATGTGAAGAGTCATTGGAACATAAAGCTAAAAAAGAAGCTCTCTCAAATGGGGATAGACCCTGTTACCCATAAGCCTTTCTCCAAACTCATTGCTGATTATGGAAAAATTGGTGGCAGTGAGAAACATAGTACTCAAATTGGGTCAAATTTGAATAATGCAATTCAGTTAAAATCAGAACCATATGAATTATCACAAGAATTCAGAAACATCCATAGCCACCCAAATCAATCACCAACATCTCCACCCAAATTTGAACCAACTGAGAACAACTTCTTATTTAACATTACTCATACTGATAATCACCCAATGGATGATTCCGTACCAAAAGTGACAGGTAAGCTCCCATTATATTTATTGCATGTGGCAGGTGCATCAAAATGCATCCAAGCATCATCATCATCTACTTGTTCTAGTTATTCCACTGCAACACAAGAAGCCTTAGCTGTAATACCCTTTAGATGGAATGACTTTCTTCTAGAAGATGCTTTTGAACCAAGTTTTAATAATAGCCAACAAGAACAAGAAACAATGAATGGCTTATCATTTTCAAAGGACTTGGTGTGCCAACAAATACAAAATGGAACAAGGCAAAGTTGGAATAAAAAAGAGGTCATGTCAAAACAAGCTACAACCAATGACTTCCAAGTTTCAACATCCAATAATATTTCTTTTGTAGAAGCCATGCTTGGTCAACAAAATGAGACTTTTCTAAGTTTTCCTCATCTTATGGAGGAACCATTCAACTATTGA 1062 0.3691 MVKSSCCEKISVKRDLCSVEEDAKRHSFVSKNNGSGNFTFDSKKAGLKRCGKSCRLRWNNYLRPDLKHDNFTSQEEDLIIKLHAAIGSRWSIISQQLPGKTDNDVKSHWNIKLKKKLSQMGIDPVTHKPFSKLIADYGKIGGSEKHSTQIGSNLNNAIQLKSEPYELSQEFRNIHSHPNQSPTSPPKFEPTENNFLFNITHTDNHPMDDSVPKVTGKLPLYLLHVAGASKCIQASSSSTCSSYSTATQEALAVIPFRWNDFLLEDAFEPSFNNSQQEQETMNGLSFSKDLVCQQIQNGTRQSWNKKEVMSKQATTNDFQVSTSNNISFVEAMLGQQNETFLSFPHLMEEPFNY 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0974 353 SUPERFAMILY Homeodomain-like 48 121 IPR009057 -
Lal17g0974 353 Gene3D - 69 131 - -
Lal17g0974 353 CDD SANT 70 110 IPR001005 -
Lal17g0974 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lal17g0974 353 SMART sant 67 115 IPR001005 -
Lal17g0974 353 SMART sant 13 64 IPR001005 -
Lal17g0974 353 Gene3D - 18 67 - -
Lal17g0974 353 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lal17g0974 353 Pfam Myb-like DNA-binding domain 70 110 IPR001005 -
Lal17g0974 353 PANTHER F14D16.11-RELATED 1 353 - -
Lal17g0974 353 PANTHER F14D16.11-RELATED 1 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0974 Lal-Chr17 7893995 7897472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0974 1 142 MYB Transcription Factor Family AT3G28470 63.380 2.75e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal17g0974 Myb_DNA-binding 5.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0974 K09422 - gmx:100795381 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0974 17 7893995 7897472 Lal17g0974 17 7893995 7897472 ECH