Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0931 ATGAACAGCGAATTCCAACGATTCGCAGTTTCATCTCGCTTTCGTCCATTCCCAAAATCCTTCTCTCTACGCGACAAAGCTTGCATGCAAACCGACATTGTTCTTGGTGTGTTTGTTACATTTTCTCGTACTGTGGCTGACCTATTTTTTCTGTTCCATATGGTGCTCAAATTTCGCACGGCTTACGTTAACCCCAAATCTCGGGTTTATGGACGCAAAGAACTTATCACTGATCCTCACCAGATCGCTACTCGCTACCTGAAGTCAGATTTCATCATTGATCTCCTTGCCACCCTTCCTCTACCCCAAATTGTGGTTTGGTTCGTGATTCCAGCGCTGAAAAATTCAACAGCAGCTCATGTAAATCACACCCTGTCTCTGATTGTTCTTAGCCAATATATTCCTCGGTTGTTTCAGATTTTTCCCCTACAACGCCGAATCTTAAAGACTAGCGGGCTTATAGCAAAAACTGCCTTGGCTGGAGCATTGTACAATCTTGTGCAGGTTTTAGGTGCTTCATGGTATGTGACATCAATTCAGCGCCAATACGAGTGCTGGAGAATAACATGTAAGAAAGAGATGAATAAAACTCATTCTCCATCTTGTAATCCTAAGTTTCTTGATTGTGCTATATTGGGGGACCATGAACGCGAAGCTTGGTTCAGACGCACTAGAGTTCTCACCGATTGTGATGCTCTCAATGATAAAAACAAATTTCAGTTTGGAATGTTCGCTGATGCTTTCACTGATCATGTTTCTTCATCAAGATTCTTCCAAAAATATTTTTACTGTCTTTGGTGGGGTTTAAAAAATCTGAGTTCATATGGACAAAATCTTCAGACCAGCACTTACAGTGGTGAAACGTTGTTTTCAAGTTTCATCTGTATCTCGGGTCTAATCCTGTTTGCGCATCTCATTGTTGCATTGCGGTCCGATGCAATTGTAATTCTGAGTCACACCGCAATTGCGAATTATCTGCAATCTTCAACTGCAAGACTTGAGGAGTGGAGACTAAAGCAAAAAGACACAGAAGAGTGGATGAATCACCGTCAACTTCCACCTGAACTTCAGGAACGTGTTCGGCGCTTTGTTCAATATAAATGGCTTGCCACTAGAGGTGTAGACGAAGAAGCTATTTTGCGCTCTTTGCCTCTGGATCTTCGTCGCCAGATTCAGAGGCATCTCTGTCTTGACATTGTTCGTCGGGTACCATTTTTTGGTCAAATGGATGACCAGCTCCTAGATGCAATATGTGAACGACTTGTTTCATCATTAAATGTAAAGGATACATACATCGTTAGAGAAGGAGATCCAGTGAAAGAAATGCTTTTCATTATCAGAGGACAAGTAGAAAGTTCCACAACTGATGGTGGAAGATCAGGGTTCTTCAACTCTATAACCCTAAAACCTGGTGACTTTTGTGGTGAAGAATTGCTTACATGGGCTTTGATGGCTACCTCTAGTCTTAACCTTCCATCATCAACTAGAACTGTTAAGACACTAACTGAACTTGAAGCATTTGCACTTAGAGCTGAAGACCTCAAATTTGTGGCTAGCCAATTTAAGCGTCTCCATAGTAAGAAACTTCAACATGCTTTTAGGTATTATTCCCATCAATGGAGGGCTTGGGGTGCTTGTTTCATACAAGCTGCATGGAGACGTTACCGTAAGAGACAATTAGCAATGGAGTTGATAGAAAAAGAGAACATCTATACAAATATGATGGATCAAGAAGATTATGAAGAAATTGGTGTAGAAGAAATTTCAAGCCATATACAAAATCTTGGGGCTACAGTTTTAGCTTCAAAATTTGCAGCAAACACTAAAAAGGGAGCATTTAGAAAAGTAACTATAGCTGAAAGCAATTTAAAGATGCCCAAGATGTTCAAGCCAACAGAACCTGATTTCTCAAGATTCCAGGAAGATTAA 1929 0.408 MNSEFQRFAVSSRFRPFPKSFSLRDKACMQTDIVLGVFVTFSRTVADLFFLFHMVLKFRTAYVNPKSRVYGRKELITDPHQIATRYLKSDFIIDLLATLPLPQIVVWFVIPALKNSTAAHVNHTLSLIVLSQYIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLVQVLGASWYVTSIQRQYECWRITCKKEMNKTHSPSCNPKFLDCAILGDHEREAWFRRTRVLTDCDALNDKNKFQFGMFADAFTDHVSSSRFFQKYFYCLWWGLKNLSSYGQNLQTSTYSGETLFSSFICISGLILFAHLIVALRSDAIVILSHTAIANYLQSSTARLEEWRLKQKDTEEWMNHRQLPPELQERVRRFVQYKWLATRGVDEEAILRSLPLDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNVKDTYIVREGDPVKEMLFIIRGQVESSTTDGGRSGFFNSITLKPGDFCGEELLTWALMATSSLNLPSSTRTVKTLTELEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRAWGACFIQAAWRRYRKRQLAMELIEKENIYTNMMDQEDYEEIGVEEISSHIQNLGATVLASKFAANTKKGAFRKVTIAESNLKMPKMFKPTEPDFSRFQED 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0931 642 Gene3D - 27 312 - -
Lal17g0931 642 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 638 - -
Lal17g0931 642 SUPERFAMILY Voltage-gated potassium channels 32 306 - -
Lal17g0931 642 SUPERFAMILY cAMP-binding domain-like 334 530 IPR018490 -
Lal17g0931 642 Pfam Ion transport protein 38 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal17g0931 642 Gene3D Helix hairpin bin 331 396 - -
Lal17g0931 642 ProSiteProfiles cAMP/cGMP binding motif profile. 405 479 IPR000595 -
Lal17g0931 642 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 25 638 - -
Lal17g0931 642 SMART cnmp_10 405 536 IPR000595 -
Lal17g0931 642 Pfam Cyclic nucleotide-binding domain 428 516 IPR000595 -
Lal17g0931 642 Gene3D Jelly Rolls 403 523 IPR014710 -
Lal17g0931 642 CDD CAP_ED 405 536 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0931 Lal-Chr17 7387004 7391990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0931 27 636 Ion Channels AT3G48010 65.931 0.0 849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0931 K05391 - gmx:100783672 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0931 17 7387004 7391990 Lal17g0931 17 7387004 7391990 ECH