Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0923 ATGCATTTTCCACTTTTCCATAACCACGATCTTTCAATACGACACCGTTTCATTCTAGGGTTTCCCAAAATCAATTTCAATACTACATGGCCGTCAGAGGCGTCAATTTCAAGTGGTACGATGGCTTTTTCTTGTCCATGCTCGCCATTAGTAGTTATTGTGGTGATTAATTGGAAGCGGTACGATTCTTGTACACACCCCTTGCACATATGGATTGTGGTTGATTACACTACTGTGTTCACTTTCCGGATTTTGATGTTTGTTGATAATGGGATTGCATCAGGATTGGGTTTAGATTTTGGTCGCCAGCAGAGATATTCTCGTTTCTGTGGAAGAATAGTTGTCCTTTCAATACTAGCATTGTTACTCTATCCATTTCTTTGGACTTGGACTATAATCGGTTCCGTGTGGTTCTCCAGCACCAAGATTTGCTTGCCTGGAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCTACTTTGCACTCACTTGTATTGCTTGCATGTCTACGAGGAAGTGGTTGGCTCGAAGACAGGCACACTTTTTAGGTTCCCGACAGGGTATCCCTATATCCGAATACAGGGTTTTACTTGAAATGATCCAAGTGCCTGATTGGGCATTTGAAGCTGCAGGCCAAGAAACAAGGGCTATGGATGAAGATGCTGCTGCATATCATCCTGGAGTTTTCCTAACTCCAGCTCAGAAAGAAGCAGTTGAAGCTTTAATTCAGGAACTGCCGAAGTTCAAATTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCTCATCTGCTTAGAAGAATTCCATGTAGGGAATGAGGTTCGTGGCCTGCCTTGTGCTCACAACTTTCATGTTGAATGTATCGATGAGTGGCTTCGATTGAATGTGAAATGTCCCCGGTGCCGTTGCTCTGTTTTTCCAAATCTTGATCTTAGTGCTCTGTCCAACATCCGCACCGAGTCGGAACAGTCTTCTGCAAGTGTTGTGACAACAAGGAGATATGTGAGAGGTCAATCTTCTAGTCAGGTTTACTTCTCAAGGTCACAGGGACATGTCCACCCAGTACATGCTGAAATTGCAAGACCAGTTGATGAGACAGACATTGGTTTGGAAAATGCTGAAAATGGTATTGCATCTATTGTAACTTGA 1155 0.4329 MHFPLFHNHDLSIRHRFILGFPKINFNTTWPSEASISSGTMAFSCPCSPLVVIVVINWKRYDSCTHPLHIWIVVDYTTVFTFRILMFVDNGIASGLGLDFGRQQRYSRFCGRIVVLSILALLLYPFLWTWTIIGSVWFSSTKICLPGEGQKWGFLIWLLFSYFALTCIACMSTRKWLARRQAHFLGSRQGIPISEYRVLLEMIQVPDWAFEAAGQETRAMDEDAAAYHPGVFLTPAQKEAVEALIQELPKFKLKAVPTDCSECLICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNIRTESEQSSASVVTTRRYVRGQSSSQVYFSRSQGHVHPVHAEIARPVDETDIGLENAENGIASIVT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0923 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 51 382 - -
Lal17g0923 384 ProSiteProfiles Zinc finger RING-type profile. 263 304 IPR001841 -
Lal17g0923 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 309 IPR013083 -
Lal17g0923 384 SUPERFAMILY RING/U-box 244 312 - -
Lal17g0923 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 51 382 IPR044793 GO:0004842|GO:0010182
Lal17g0923 384 CDD RING-H2_RNF111_like 262 306 - -
Lal17g0923 384 Pfam Ring finger domain 262 304 IPR001841 -
Lal17g0923 384 SMART ring_2 263 303 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0923 Lal-Chr17 7337426 7342601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0923 86 378 C3H Transcription Factor Family AT3G47990 68.243 1.14e-145 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0923 K16284 - gmx:100812016 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0923 17 7337426 7342601 Lal17g0923 17 7337426 7342601 ECH
Lal7g0925 7 15679833 15684416 Lal17g0923 17 7337426 7342601 PCT
Lal17g0923 17 7337426 7342601 Lal7g0925 7 15679833 15684416 PCT