Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0887 AACATCATCCCCAATTCCAAAATCTTCTTCTCTTCCTTCAAACCCTCTCTTCCCTCTTCACCACTTTATCAAATGGCAATTTCTTCAGCTTCTTCTAAACTCATTTACTCACTTTCCTCTTCTTCCCCTTCTTATCCCTCCAATTCCCCTTCCTCCTTCCTCACCACCAACCTCAAACTAACCCCTTCCTCCTCCCTCAAACCCTCCACAATCCTCCACCTCACTCCCTCCACCGCCACCACCCGCCACCGCTCCTTCACAATCCGCGCCGCCCGTGGCAAATTCGAGCGAAAGAAACCCCACGTCAATATAGGCACCATAGGCCATGTTGACCACGGAAAGACCACACTCACTGCTGCCCTGACCATGGCCCTGGCTGCCAACGGCAACAGCGCGCCGAAGAAATACGACGAGATAGATGCTGCCCCTGAGGAGCGTGCACGTGGCATTACAATTAACACTGCAACGGTTGAGTATGAGACTGAGAATCGGCATTATGCCCATGTGGACTGTCCTGGACACGCTGATTATGTTAAGAATATGATTACCGGTGCTGCTCAGATGGACGGCGCGATACTCGTTGTTTCGGGTGCTGATGGCCCAATGCCACAAACTAAAGAGCATATCCTTCTTGCTAAGCAAGTTGGAGTTCCTAACATGGTGGTGTTCCTTAATAAGCAAGACCAGGTTGATGATGAGGAGCTTCTCGAACTTGTTGAACTTGAGGTTCGTGACCTTCTCTCGTCTTATGAGTTCCCGGGTGATGATATTCCCATTGTTTCTGGTTCTGCTCTCTTGGCTTTGGAAGCTTTGATGGCGAATCCTGCGATCAAGCGTGGAGATAATCAGTGGGTGGACAAGATTTATGCGCTAATGGATAATGTGGATAGCTACATACCTATTCCTGTGCGCCAAACCGATCTTCCATTTTTGCTGGCTATTGAAGATGTGTTTTCCATCACTGGTCGTGGGACTGTGGCCACAGGTCGTGTTGAGAGGGGTACCATTAAGGTCGGAGACACTGTTGATCTTGTTGGTTTGAGGGAAACCAGGAGTACTACTGTGACCGGTGTGGAAATGTTCCAAAAGATTCTGGATGATGCCATGGCTGGGGATAATGTAGGGTTGTTGCTCAGGGGTATTCAGAAGATCGATATTCAGAGGGGGATGGTTTTGGCTAAGCCTGGTACTATTACACCGCATACAAAGTTTAGTGCCATTGTCTACGTTTTGAAGAAGGAAGAAGGAGGGAGGCACTCCCCTTTCTTTGCAGGTTACAGGCCGCAATTCTACATGAGGACCACCGATGTCACCGGCAGAGTTGCTTCTATTATGAATGATAAGGATGAGGAATCGAAGATGGTTATGCCAGGAGACCGGGTCAAGATGGTGGTTGAACTTATAATGCCCGTGGCTTGCGAACAGGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACTGTTGGAGCTGGTGTTATTCAATCTATCCTTGAGTGA 1497 0.487 NIIPNSKIFFSSFKPSLPSSPLYQMAISSASSKLIYSLSSSSPSYPSNSPSSFLTTNLKLTPSSSLKPSTILHLTPSTATTRHRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAANGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRDLLSSYEFPGDDIPIVSGSALLALEALMANPAIKRGDNQWVDKIYALMDNVDSYIPIPVRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGDTVDLVGLRETRSTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVASIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSILE 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0887 498 Pfam Elongation factor Tu domain 2 324 392 IPR004161 GO:0005525
Lal17g0887 498 PANTHER ELONGATION FACTOR TU-RELATED 47 498 - -
Lal17g0887 498 Hamap Elongation factor Tu [tuf]. 90 498 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lal17g0887 498 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 397 497 IPR009001 -
Lal17g0887 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 325 IPR027417 -
Lal17g0887 498 Gene3D - 91 302 IPR027417 -
Lal17g0887 498 PANTHER ELONGATION FACTOR TU 47 498 - -
Lal17g0887 498 CDD EF_Tu 100 302 IPR041709 -
Lal17g0887 498 Pfam Elongation factor Tu C-terminal domain 397 496 IPR004160 -
Lal17g0887 498 TIGRFAM EF-Tu: translation elongation factor Tu 91 498 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lal17g0887 498 Pfam Elongation factor Tu GTP binding domain 99 300 IPR000795 GO:0003924|GO:0005525
Lal17g0887 498 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 140 155 IPR031157 -
Lal17g0887 498 Gene3D Translation factors 305 433 - -
Lal17g0887 498 Gene3D Translation factors 437 497 - -
Lal17g0887 498 SUPERFAMILY Translation proteins 304 400 IPR009000 -
Lal17g0887 498 TIGRFAM small_GTP: small GTP-binding protein domain 102 235 IPR005225 GO:0005525
Lal17g0887 498 PRINTS GTP-binding elongation factor signature 103 116 IPR000795 GO:0003924|GO:0005525
Lal17g0887 498 PRINTS GTP-binding elongation factor signature 147 155 IPR000795 GO:0003924|GO:0005525
Lal17g0887 498 PRINTS GTP-binding elongation factor signature 167 177 IPR000795 GO:0003924|GO:0005525
Lal17g0887 498 PRINTS GTP-binding elongation factor signature 183 194 IPR000795 GO:0003924|GO:0005525
Lal17g0887 498 PRINTS GTP-binding elongation factor signature 220 229 IPR000795 GO:0003924|GO:0005525
Lal17g0887 498 CDD EFTU_II 310 396 IPR033720 -
Lal17g0887 498 CDD EFTU_III 399 493 - -
Lal17g0887 498 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 99 303 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0887 Lal-Chr17 6811419 6814082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0887 97 496 Eukaryotic Initiation Factors Gene Family AT5G60390 31.306 6.18e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0887 K02358 - qsu:112012250 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0887 17 6811419 6814082 Lal17g0887 17 6811419 6814082 ECH
Lal17g0887 17 6811419 6814082 Lal21g0751 21 6180413 6182827 LSH
Lal17g0887 17 6811419 6814082 Lal4g0789 4 6731232 6734126 LSH