Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0870 ATGGCGGCTGCGACAGTTGCGGCGGTTACCGAGCCAAGAAAGCAACCTCGCCCCGGCAAGGGAGGCTTCGAGGCTCACGGCCTAAGTGAAGAAGAAGCGCGTGTCCGAGCCATCTCTGAGATCGTCAACTCCATGGTAGACCTCTCTCGCAAGGGCCACAACGTCGATCTCAACGCTCTTAAGTCCGCCGCGTGCCGCAAGTACGGCCTCTCACGCGCCCCCAAGCTCGTCGAGATGATCGCTGCTCTCCCTGACTCTGAACGTGAGGCGCTGCTTCCTAAGCTCCGTGCCAAACCGGTTCGAACCGCTTCAGGGATTGCGGTGGTCGCAGTTATGTCGAAACCGCATCGGTGTCCGCATATCGCGACAACGGGGAATATATGTGTTTATTGTCCCGGAGGACCTGACTCGGATTTTGAGTATAGTACTCAGTCTTATACTGGATATGAACCTACTAGCATGCGTGCAATTCGAGCAAGGTATAACCCATATGTCCAAGCAAGAAGCAGGATAGATCAGCTTAAGCGTTTGGGTCATAGTGTAGACAAGGTTGAGTTCATCTTAATGGGTGGCACTTTCATGTCACTTCCAGCTGATTACCGTGATTACTTTATAAGGAATCTTCATGATGCGTTGTCTGGACACACTTCTGCCAATGTAGAAGAGGCAGTGGCATATTCCGAACATAGTGCAACTAAGTGTATTGGCATGACGATTGAAACGAGGCCAGATTATTGTCTCGGGCCTCACTTGCGACAAATGCTTTCTTATGGCTGTACACGACTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCCCGTGACACCAATAGAGGTCATACTGTGGCTGCTGTAGCCGATTGTTTTTGTTTGGCAAAAGATGCTGGTTTCAAGGTTGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAAAGAGACATGGAAAGTTTCCGTGAGTTTTTTGAGAGTCCCTCATTTAGAGCAGATGGGCTTAAAATATATCCCACACTTGTAATACGTGGAACTGGGCTTTATGAACTCTGGAAAACTGGCAGGTATAGAAATTATCCACCCGAGCAACTTGTGGACATTGTAGCAAGGATCCTTGCTATGGTACCTCCCTGGACACGTGTTTATAGAGTTCAGCGAGATATTCCCATGCCTCTGGTGACATCTGGAGTTGAGAAAGGGAATCTGAGGGAGCTAGCATTAGCTCGAATGGAAGACCTGGGATTGAAATGTCGTGATGTTCGTACCAGAGAAGCTGGAATTCAGGATATCCACCACCAAATTAAGCCAGAAGAGGTGGAGCTTGTTCGTCGTGACTATATGGCAAATGAGGGTTGGGAAACATTTCTGTCTTATGAAGATACACGGCAGGATATCCTTGTGGGTCTGTTGCGACTGCGAAAATGTGGCCGGAACACTACTTGTCCAGAACTTATGGGGAAGTGTTCTATTGTTCGTGAACTCCATGTTTATGGAACTGCTGTACCAGTTCATGGGCGGGATGCTGACAAGTTACAACACCAGGGTTATGGTACACTTCTAATGGAGGAGGCAGAGCTTATTGCTCGCAGAGAACACAGATCAACAAAAATAGCTGTAATTTCGGGGGTTGGTACACGCCATTATTACAGGAAACTAGGATATGAGCTTGAAGGGCCTTACATGGTGAAATTACTGTAA 1698 0.4812 MAAATVAAVTEPRKQPRPGKGGFEAHGLSEEEARVRAISEIVNSMVDLSRKGHNVDLNALKSAACRKYGLSRAPKLVEMIAALPDSEREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAELIARREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKLL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0870 565 PANTHER ELONGATOR COMPLEX PROTEIN 3 6 565 IPR034687 -
Lal17g0870 565 Pfam Radical SAM superfamily 126 314 IPR007197 GO:0003824|GO:0051536
Lal17g0870 565 SMART MiaB 108 370 IPR006638 GO:0003824|GO:0051536
Lal17g0870 565 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 415 565 IPR000182 GO:0016407
Lal17g0870 565 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 374 561 IPR016181 -
Lal17g0870 565 Pfam Radical_SAM C-terminal domain 332 411 IPR032432 -
Lal17g0870 565 Gene3D - 417 565 - -
Lal17g0870 565 MobiDBLite consensus disorder prediction 1 26 - -
Lal17g0870 565 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 53 564 IPR034687 -
Lal17g0870 565 SFLD ELP3-like 56 565 IPR034687 -
Lal17g0870 565 SUPERFAMILY Radical SAM enzymes 138 377 - -
Lal17g0870 565 PIRSF HAT_Elp3 23 565 IPR034687 -
Lal17g0870 565 SFLD elongater protein-like 56 565 - -
Lal17g0870 565 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 6 565 IPR039661 -
Lal17g0870 565 CDD Radical_SAM 115 362 - -
Lal17g0870 565 Pfam Acetyltransferase (GNAT) family 418 554 IPR000182 GO:0016407
Lal17g0870 565 ProSiteProfiles Radical SAM core domain profile. 101 391 IPR007197 GO:0003824|GO:0051536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lal17g0870 Radical_SAM 1.9e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0870 K07739 - gmx:100818764 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0870 17 6628949 6634894 Lal17g0870 17 6628949 6634894 ECH