Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0859 CTAGAAGTCAAATCATTTTCAGTTCCAACTTCTAACAGCCTCATTCAACGTCACATTCAAAACCAAACTCTACTAACTTCAACAATGGCCAACCAACCCCAAACACATCCTAATGTCACTATCGACCCAAACAGCGGTTTCAACTCTCAAACCAGAACCTTCCACAGCCTCCGCCCAAACGCCCCTCTTCCTCCACCCACCCACCCACTCTCTCTCACCGACTACACCCTCTCTCTAATCCCCTCCACCGCCGCCACCGCCATCATTGACTCCGACACCGACACTCACCTCTCCTACTCCGTCTTACTCCGCCAAATTAAATCCCTCGCTTCCTCCCTCAAATCCCTCATTCCTTCTCTCTCTAAAGGCCACGTGGCACTCATACTCTCCCCTTCTTCCCTGCACGTTCCCGTACTCTATTTCTCCCTCCTCTCCCTCGGTGTTGTAATCGCTCCCGCTAACCCGCTCAGTACCCCTTCCGAGTTGACTCACATTGTTCAACTCACTAAACCCGTCATCGCTTTCACTACTTCCTCAACTTCAACTGACATTCCAAATCTCCAACTCGGCACTGTTATAATCGACTCACCTCAATTCATTTCAATGCTCAATAACTTCAACAACTCAGAATCTCCACAAGTTGAAGTGGCTCAGTCTGACTTGGCCGCGATTCTCTTCTCTTCCGGAACCACTGGCCGAGTCAAGGGCGTGGAGCTCACGCATCGGAATTTCATAGCATTGACCGGAGGTTTCTGTCACACAAATCTCATGACAGGAAATCCAGAAGAGGAAATAGAATCGAAATCAGTGTCTCTGTTCACGCTTCCGCTATTCCATGTGTTCGGGTTCTTCATGATGGTGTATACAATAGCGTTGGGAGAGACGCTGGTGTTGATGCAGAGGTTCGATTTCGAAAGGATGCTGAAGTTGGTGGAGAAGTATAGGATCAGTTCCATACCGGTGTCACCACCGCTTGTGGTGTTGCTGGCGAAGTCGGAGCTGGTGAATAAATACGATGTTAGCTCGCTGAAGATACTTGGGTGTGGTGGTGCGCCGCTTGGGAAGGTGGTGTTGGAGAGCTTTGCTGCTAGATTTCCTAATACTATAATTGAGCAGGGCTATGGTCTGACTGAAAGTTCAGGAGCAGCATCAGCAGCGGTAGGGGCTGATGAGGCTAAGGTCCATGCTTCTGTAGGTCGACTTTCAGAAAATATGGAGGCCAAGATAGTGGACCCGGTGACCGGAGAAACATTGTCTCATGGTCAAAAAGGAGAGCTGTGGCTGCGAGGTCCAACAATTATGAAAGGTTATGTAGGGGATAATAAGGCAACAATTGAAACATTGGATTCAGAAGGATGGCTTAAGACTGGTGATCTTTGTTATTTTGACTCTCATGGTTTTCTTTATATTGTAGATAGACTCAAGGAATTAATTAAGTACAAGGCTTATCAGGTTCCCCCAGCTGAATTGGAAAATTTACTTCACACCAATCCTGAAATTTCTGATGTTGCAGTGGTTCCGTATCCTGATGAAGAGGCAGGGCAGATTCCAATGGCCTTTGTGGTAAGAAAGCCTGGAAGCATCATCACTGCAGCTCAGGTCATGGAGTTTGTAGCAAAGCAGGTCTCACCATACAAGAAGATTAGGCGTGTTTCATTTATCAACTCTATCCCAAAATCACAGTCTGGCAAAATTTTGAGAAGAGAATTAGTTGCTCATGCTCTATCTAATGGTTCATCCAAATTGTGA 1749 0.4694 LEVKSFSVPTSNSLIQRHIQNQTLLTSTMANQPQTHPNVTIDPNSGFNSQTRTFHSLRPNAPLPPPTHPLSLTDYTLSLIPSTAATAIIDSDTDTHLSYSVLLRQIKSLASSLKSLIPSLSKGHVALILSPSSLHVPVLYFSLLSLGVVIAPANPLSTPSELTHIVQLTKPVIAFTTSSTSTDIPNLQLGTVIIDSPQFISMLNNFNNSESPQVEVAQSDLAAILFSSGTTGRVKGVELTHRNFIALTGGFCHTNLMTGNPEEEIESKSVSLFTLPLFHVFGFFMMVYTIALGETLVLMQRFDFERMLKLVEKYRISSIPVSPPLVVLLAKSELVNKYDVSSLKILGCGGAPLGKVVLESFAARFPNTIIEQGYGLTESSGAASAAVGADEAKVHASVGRLSENMEAKIVDPVTGETLSHGQKGELWLRGPTIMKGYVGDNKATIETLDSEGWLKTGDLCYFDSHGFLYIVDRLKELIKYKAYQVPPAELENLLHTNPEISDVAVVPYPDEEAGQIPMAFVVRKPGSIITAAQVMEFVAKQVSPYKKIRRVSFINSIPKSQSGKILRRELVAHALSNGSSKL 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0859 582 Gene3D - 67 475 IPR042099 -
Lal17g0859 582 Gene3D - 476 576 IPR045851 -
Lal17g0859 582 Pfam AMP-binding enzyme C-terminal domain 489 564 IPR025110 -
Lal17g0859 582 CDD 4CL 65 570 - -
Lal17g0859 582 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 54 571 - -
Lal17g0859 582 SUPERFAMILY Acetyl-CoA synthetase-like 16 575 - -
Lal17g0859 582 ProSitePatterns Putative AMP-binding domain signature. 224 235 IPR020845 -
Lal17g0859 582 Pfam AMP-binding enzyme 85 480 IPR000873 -
Lal17g0859 582 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 54 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0859 Lal-Chr17 6529096 6533598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0859 34 582 Monolignol Biosynthesis Gene Families AT5G63380 58.333 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0859 K01904 - gmx:100777435 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0859 17 6529096 6533598 Lal17g0859 17 6529096 6533598 ECH
Lal17g0859 17 6529096 6533598 Lal21g0772 21 6506008 6511203 LSH