Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0855 TTTTATTTTGTCGTTGAAGCCAAAGAAACAGAAACACACACATCAATGGTTTCAACGAGGCGCAACACTGGATCTCTTTCTTCCAACAACACTAAACGACCTTCTTCTTCTTCCGACGACAATAATAACCCTCCTTCTCCTTCTTCTAAACGACACAAGGTTGATAATGGCGGCGACACGTCAGAGAAACCGACGCCGGCGGCGGAGAATTCTAAGGATTTGAGAACTCTTGAGCCTCCTTCCGATCCCGGAGAATGCGGTACCGGCGATATTCAGATCTCTGATGCTGGCGGTGCTGATGGTAAATGTGACGCTGCGCCTGCGGTGGCTGTGGAAGCTTCGATTGCTGAAGGATCTTCTCCAACAACTTTGGTGGCTGAGAAACAAAAGGCTTCTTTCACTTCATGGGGCGTATATCAGAAGCAGAATCCAAAAACTGATTGTTCGGTTCCTTGGTGCAGGTTATTGACTCAGTCTTCACAGAATCTAAATGTTGTCATTGGCACACCGAGTTTCACCATTGGTTCCAGTAGAAGTTGCAACTTTCCATTGAAGGATCAGACTATCAGTGGAAATTTATGCAAGATCAAGCAAACCGAGTGTGGGGGAAGTGCTGTAGCTGTGCTAGAGAGTACGGGTAGCAAAGGATCTGTGCTAGTAAATGGGACGCTTGTCAAGAAGAACACCTGCTGTGTGCTTAATTCGGGTGATGAGGTGGTTTTTGGGTCGCTGGGGAATCATTCTTATATTTTTCATCAACTAAATATCGAAGGCACAGTTAAGGGTGCAGACATTCAGAATGGTGTTGGGAAATTTGTGCAGATTGAAAGGAGAAATGGAGACTCTTCAGCTGTGGCAGGGGCTTCCATCTTGGCTTCTCTTTCTAGCCTCAGACATGATCTTCCAAATTTGAAGTCTCCATCTCAGACTGCCAATAAACCTCACCACGTTACTGATGTTTCTGGCCATTCTGTTCACCGTGATGGTACAGATACAGAAGCTGAGCTTGACGGTCCTGAAAGCAACTCAGCTCCAAATGTGGGGACGGATAAGGCTTCTGATGTTGGAGCAAGCGACAAAAACTCTCCTTTGGATTGTGATCCAGATGATACAGGCACAGAAGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTCCTAGGGCCTTTCTTCAGGATCCTTGCTGGATCTAATTGTAAACTGAAATTGAGCAAAAATATCTTTAAACAGGTATTGGAAGAAAGAAATGGGACGAGGGATACACTACCTGCATCGACTTCGGGTATGTCTGTGCGCTGCGCAGTTTATAAAGAAAATGTTCAAGCTGCAGTTCTGGATGGAAAAGAAATAGACGTGTCCTTTGACAGCTTCCCATACTTTTTAAGTGAGAATACAAAAAATGTCCTTGTTGCAGCATGCTTTATACACCTGAAGCATAAAGAACATGCAAAGTATACCACAGATCTTACAACCATAAACCCTCGTATTCTACTCTCGGGACCTGCAGGATCAGAAATATACCAGGAGATGTTGGCAAAAGCACTAGCAAATTTCTTTGGAGCTAAATTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCTTCAAAGGAAGCTGAGCTGCTCAAAGATGGATCCAATGCTGATAAATCCTGCAGCTCCGCCAAACAAAGTCCTACAGCCACAGACATGGCTAGGAGCACGGATCCATCAACTAGCGACACTGATACACCTAGCTCTTCAAATACACCTACTCCACATGGGCTCGAGTCCCAACCTAAGTTAGAAATTGATAGTGTTGCATCTACCTCTGTGACAGCTAAAAATTGTTTGTTTAAGCTAGGTGATAAGGTAAAATATAGCTGCTCATCTTCTGGTAGTTTGTATCAGACATCTTCTTCAAGGGGTCCACCTAATGGAAGTCGTGGAAAGGTTGTCTTGGTTTTTGAGGAAAATCCCTTGTCAAAAGTTGGTGTAAGATTTGATAAACCTGTACCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAACGTCACTGATCTTCGCTTGGAAAATGGTGGCATTGATGAACTGGACAAATTACTTATTAATATATTGTTCGAGGTTGTGTTTACTGAAAGCAGAACTGCACCTCTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTAGGAAATGGAGATCCATATTCATTTAGAAGTAAGCTTGAAAAGCTTCCAGACAATGTGGTGGTCATAGGTTCACACACTCACAATGACAGTCGGAAGGAGAAGTCGCATCCTGGGGGTTTGCTTTTTACAAAGTTCGGCAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCTGTAAGAACCTCATCTCCTTTTGAGTTCATTCTTCTATTGCAAACAGAGAAACATGAATTGCCTGTTTCTGCATTTGTTTCTTGTGATGGTTTTGGAAGATTGCATGAAAGGGGAAAGGAAGTCCCAAAGCCAAACAAAACTTTGACCAAGCTTTTTCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGGGCTTTTAGCATCTTGGAAGCAGCAACTCGATCGAGATGTTGAGACTCTCAAAATCAAAGCAAATTTGCACCATTTGCGCATGGTTTTAAGCCGTTGCGGGATGGAATGTGAAGGACTTGAGACCTTGTGCATCAAGGATCAGACACTTACAAATGAAATTGTAGAGAAGATTGTTGGTTGGGCTTTGAGCCACCACCTAATGCAAAATTCTGAAGCTGATCCTGAAGCAAAGCTTGTGTTGTCTTGTGAGAGCATCCAGTATGGAATTGGGATTTTACAGGCTATCCAGAATGAGTCAAAGAGCCTGAAGAAGTCTCTTAAGGATGTTGTAACAGAAAACGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAATGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACAATGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCGTGCAAGGGTATCCTATTATTTGGTCCTCCTGGAACAGGTAAGACAATGCTTGCGAAGGCAGTTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGCATTACGTCTAAGTGGTTTGGCGAGGGTGAGAAATATGTAAAAGCTGTTTTCTCCCTGGCGAGTAAAATTGCTCCTAGTGTTATATTTGTTGACGAAGTTGACAGCATGTTGGGCCGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGATTACGTACAAAGGAAACCGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCCTATGACCTAGACGAGGCTGTCATACGGAGGTTGCCTCGGAGATTAATGGTAAATTTGCCTGATGCTCCGAACAGAGCAAAAATATTAAAAGTCATACTAGCTAAAGAGGACTTGTCTTCTGATGTTGATCTGGAGGCAATTGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGTGTAACTGCTGCACACCGTCCTATTAAAGAAATATTAGAAAAAGAAAAGAAGGAACATGCTGCTGCTCTAGCCGAAGGAAGACCTCCTCCAGCATTAAGTGGAAGTGCAGATATCCGATCCTTGAACATGGAAGACTTTAGACATGCTCATCAACAGGTATGTGCAAGTGTTTCATCCGAATCCATGAATATGACCGAGCTTCTACAATGGAATGAACTATATGGCGAAGGTGGTTCAAGAAGAAAAAGCTCACTCAGCTATTTCATGTGA 3876 0.4316 FYFVVEAKETETHTSMVSTRRNTGSLSSNNTKRPSSSSDDNNNPPSPSSKRHKVDNGGDTSEKPTPAAENSKDLRTLEPPSDPGECGTGDIQISDAGGADGKCDAAPAVAVEASIAEGSSPTTLVAEKQKASFTSWGVYQKQNPKTDCSVPWCRLLTQSSQNLNVVIGTPSFTIGSSRSCNFPLKDQTISGNLCKIKQTECGGSAVAVLESTGSKGSVLVNGTLVKKNTCCVLNSGDEVVFGSLGNHSYIFHQLNIEGTVKGADIQNGVGKFVQIERRNGDSSAVAGASILASLSSLRHDLPNLKSPSQTANKPHHVTDVSGHSVHRDGTDTEAELDGPESNSAPNVGTDKASDVGASDKNSPLDCDPDDTGTEAGNVKLSGVNDFLGPFFRILAGSNCKLKLSKNIFKQVLEERNGTRDTLPASTSGMSVRCAVYKENVQAAVLDGKEIDVSFDSFPYFLSENTKNVLVAACFIHLKHKEHAKYTTDLTTINPRILLSGPAGSEIYQEMLAKALANFFGAKLLIFDSHLLLGGLSSKEAELLKDGSNADKSCSSAKQSPTATDMARSTDPSTSDTDTPSSSNTPTPHGLESQPKLEIDSVASTSVTAKNCLFKLGDKVKYSCSSSGSLYQTSSSRGPPNGSRGKVVLVFEENPLSKVGVRFDKPVPDGVDLGGACEGGQGFFCNVTDLRLENGGIDELDKLLINILFEVVFTESRTAPLILFMKDAEKSIVGNGDPYSFRSKLEKLPDNVVVIGSHTHNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPVRTSSPFEFILLLQTEKHELPVSAFVSCDGFGRLHERGKEVPKPNKTLTKLFPNKVTIHMPQDEGLLASWKQQLDRDVETLKIKANLHHLRMVLSRCGMECEGLETLCIKDQTLTNEIVEKIVGWALSHHLMQNSEADPEAKLVLSCESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTMKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVDLEAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEHAAALAEGRPPPALSGSADIRSLNMEDFRHAHQQVCASVSSESMNMTELLQWNELYGEGGSRRKSSLSYFM 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0855 1291 ProSitePatterns AAA-protein family signature. 1130 1149 IPR003960 GO:0005524|GO:0016887
Lal17g0855 1291 Pfam AAA+ lid domain 1180 1218 IPR041569 -
Lal17g0855 1291 Gene3D - 1159 1253 - -
Lal17g0855 1291 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 96 385 - -
Lal17g0855 1291 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 409 1291 - -
Lal17g0855 1291 MobiDBLite consensus disorder prediction 301 317 - -
Lal17g0855 1291 MobiDBLite consensus disorder prediction 319 334 - -
Lal17g0855 1291 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 96 385 - -
Lal17g0855 1291 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 409 1291 - -
Lal17g0855 1291 MobiDBLite consensus disorder prediction 16 50 - -
Lal17g0855 1291 MobiDBLite consensus disorder prediction 1 102 - -
Lal17g0855 1291 Coils Coil 947 967 - -
Lal17g0855 1291 Pfam ATPase family associated with various cellular activities (AAA) 1027 1156 IPR003959 GO:0005524|GO:0016887
Lal17g0855 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1267 IPR027417 -
Lal17g0855 1291 MobiDBLite consensus disorder prediction 301 373 - -
Lal17g0855 1291 Gene3D - 985 1266 IPR027417 -
Lal17g0855 1291 Pfam FHA domain 173 242 IPR000253 GO:0005515
Lal17g0855 1291 Gene3D - 151 260 - -
Lal17g0855 1291 SUPERFAMILY SMAD/FHA domain 151 252 IPR008984 GO:0005515
Lal17g0855 1291 MobiDBLite consensus disorder prediction 548 590 - -
Lal17g0855 1291 CDD FHA 152 251 IPR000253 GO:0005515
Lal17g0855 1291 SMART AAA_5 1023 1160 IPR003593 -
Lal17g0855 1291 MobiDBLite consensus disorder prediction 547 595 - -
Lal17g0855 1291 CDD AAA 1025 1158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0855 Lal-Chr17 6471076 6482922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0855 986 1238 Calmodulin-binding Proteins AT3G56690 40.385 9.68e-43 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0855 - - gmx:100780098 1923.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0855 17 6471076 6482922 Lal17g0855 17 6471076 6482922 ECH
Lal17g0855 17 6471076 6482922 Lal4g0729 4 6057220 6072105 LSH
Lal14g1464 14 15713006 15723247 Lal17g0855 17 6471076 6482922 PCT
Lal7g0882 7 15347215 15359360 Lal17g0855 17 6471076 6482922 PCT
Lal17g0855 17 6471076 6482922 Lal14g1464 14 15713006 15723247 PCT
Lal17g0855 17 6471076 6482922 Lal7g0882 7 15347215 15359360 PCT