Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0841 ATGGTAAGCACGGAATGTAATAAAGGTGATGCCTTAAAGGCTAAAGGGCTTGCAGAGGAGAAGCTTGTAAAGAAGGACTATGGTGGAGCAAGGATATTCGCAATGAAGGCTCGAGACTTGGATCCCAATCTTGCTGGCCTTCCTCAATTGCTGGCAACCATTGAAGTGAATATCTCTGCTGAAAGAAGAGTCAATGGACAAGTTGATTGGTACGGGGTCCTTGGCACGCAACCCTTTGCTGATGACGCAACAATTCGAAGATGTTATCGGAAACTGGCTCTTATGCTGCACCCAGATAAGAATAAATCTGTAGGTGCAGTTGACGCATTTAAACATATCACACAGGCATGGAGTTTATTATCGGATAAAGACAAGAAAGTCATCTATGACCAAAACCGAAATTCATGGGGTAGATATGAAGAAATTCCAGGCAGGAAACCTTCTGTACCAGCTCATCAGAATGGTTTCTGTAATAATATATTCAACACTGCTAACCGCAAGGATAGAGGTCCTAGGAGTGGTACTCATCCCATTCCTTCTCCAGTATCTCCCGTGACATTGAAACATACATTTTGGACCAGATGCAATTCCTGCAGGACAAAATTTGAGTACCGTACTGCTTATATCAACTGCAAACTTATTTGCAGCAGCTGCCATCAGTCCTTTTCGGCTCATGAGGAACCACCCCCACCTGTATACAAAAATGGTTCATCCACTTCAAGAATTTCTCAAGTGAAGCAATATAACGTCAACTCAACCAGAATTGAAAGAAACTGTCATGCTTCAGGAAGGACCCCAATGTATGCAGTCAACTCATCACTTGGACCAGGTCGTTTGTCTATGCCAGGTGGCATTTCCAGTGTACCGACACCAGCTTCTTCTGCTGCTGAAGCACCTGCTGTTTATGGAACGTCATCTGAGAATTTGAAGAGACGGCGTGAAGATTCAAAACCTATCATCAGGGAGGAGGGCCATTTTGAGAAAGCTCATGCTGTTGTGAGAAATGTTTCTGGTTCAACTTCCAAGCCCTCATGTTTTGGTCCAAATTCTGTTCTGATAGGAGATAGTTCAAGGAAAATAAGGCGCACAGATGAAAATCCAGTACATGGTGATGGAAGGGTTAATGCTGCTGGAAGTTACAAACGGAATGGTACTAGGGAAGTATCACAGTTGCAAATGAAAAGCATGTTGATGGAAATGGCTCGGAAGGAGATTCGTAAAAAGCTTCATGAATTGAAGGCTTCTTCTATACCAAGGAACTTAGAAAAGCCAGAGAATACTAATGCCGAAGTCAGAGAGAAGAACAGACAGCAGGCTATTAGTGGGGTAAAACATGCTGCCCCAGAATCTGTTGATTCTGAGACCATAGGCAAGAAGTGTTTCTCTGCTGACTCAGAAGTAACTGAGTCTATCACCATGAGTGTTCCAGACCCAGATTTCCATGATTTCGATGGGGACCGTATTGAAAACGCCTTTGGTGAGAATCAAATTTGGGCGGCTTATGATGATGATGATGGCATGCCACGCTTCTATGCTTTAATCAACAGTGTGATCTCAACAAAACCTTTCAAAATGAAGATTAGTTGGCTTAGCTCCAAGACCAACGATGAATTGGCCCCGATTAAGTGGGTCAGTGCTGGCTTCACCAAAACTATTGGGGACTTACGAATTGGCAAGCGTCAACTTTCTACCACTCTTAATACCTTCTCGCACAGGGTTAAGTGGACTAAAGGTTCAAGAGGGATTATACATATATATCCTAAGAAGGGGGACGTTTGGGCTCTGTTTCGAAACTGGTCTGTTGAATGGAATGAATTTACAGAAGATGAAATCATACATAAGTATGACATGGTGGAAGTGCTTGATGACTACAGCGACGAGCAAGGTGTAGATGTTGCCCCGCTTGCTAAAGTTGCAGGTTTCAAGACAGTATTCCGCCAGAATGCAGATCGAACAAAAATCAGGAATATTCCGAAGGCAGAGATGTTTCGCTTCTCACACCAGGTACCGTCATACTTGCTTACCGGTCAAGAAGGTCCAAATGCTCCTAGTGGTTGCTTGGAGATTGATCCTGCTGCTACGCCCATGGAACTTCTCCAGACAGCCATAAAAGAAGCTCCAGAGCAAGAAATGACAAGAGAGAAATCTTCAAAAGATGAACCACAGCCCAATGTGAATTCCAGCGAGGATGCCATTGAAGATGTTCACCGAAAAGAGGTCGCGGAAGCAACGAAGAGAAAGGAAAGCAGGCCTGAGATTTTGTTTGTATACAAACGGAGACGTCTGAAAGGTCTGAATTAA 2301 0.4376 MVSTECNKGDALKAKGLAEEKLVKKDYGGARIFAMKARDLDPNLAGLPQLLATIEVNISAERRVNGQVDWYGVLGTQPFADDATIRRCYRKLALMLHPDKNKSVGAVDAFKHITQAWSLLSDKDKKVIYDQNRNSWGRYEEIPGRKPSVPAHQNGFCNNIFNTANRKDRGPRSGTHPIPSPVSPVTLKHTFWTRCNSCRTKFEYRTAYINCKLICSSCHQSFSAHEEPPPPVYKNGSSTSRISQVKQYNVNSTRIERNCHASGRTPMYAVNSSLGPGRLSMPGGISSVPTPASSAAEAPAVYGTSSENLKRRREDSKPIIREEGHFEKAHAVVRNVSGSTSKPSCFGPNSVLIGDSSRKIRRTDENPVHGDGRVNAAGSYKRNGTREVSQLQMKSMLMEMARKEIRKKLHELKASSIPRNLEKPENTNAEVREKNRQQAISGVKHAAPESVDSETIGKKCFSADSEVTESITMSVPDPDFHDFDGDRIENAFGENQIWAAYDDDDGMPRFYALINSVISTKPFKMKISWLSSKTNDELAPIKWVSAGFTKTIGDLRIGKRQLSTTLNTFSHRVKWTKGSRGIIHIYPKKGDVWALFRNWSVEWNEFTEDEIIHKYDMVEVLDDYSDEQGVDVAPLAKVAGFKTVFRQNADRTKIRNIPKAEMFRFSHQVPSYLLTGQEGPNAPSGCLEIDPAATPMELLQTAIKEAPEQEMTREKSSKDEPQPNVNSSEDAIEDVHRKEVAEATKRKESRPEILFVYKRRRLKGLN 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0841 766 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Lal17g0841 766 SUPERFAMILY Chaperone J-domain 62 135 IPR036869 -
Lal17g0841 766 Gene3D DnaJ domain 66 173 IPR036869 -
Lal17g0841 766 ProSiteProfiles dnaJ domain profile. 69 133 IPR001623 -
Lal17g0841 766 MobiDBLite consensus disorder prediction 422 451 - -
Lal17g0841 766 MobiDBLite consensus disorder prediction 730 747 - -
Lal17g0841 766 MobiDBLite consensus disorder prediction 286 314 - -
Lal17g0841 766 MobiDBLite consensus disorder prediction 707 747 - -
Lal17g0841 766 Pfam DnaJ domain 69 130 IPR001623 -
Lal17g0841 766 Pfam Domain of unknown function (DUF3444) 471 678 IPR024593 -
Lal17g0841 766 SMART dnaj_3 68 125 IPR001623 -
Lal17g0841 766 PRINTS DnaJ domain signature 71 89 IPR001623 -
Lal17g0841 766 PRINTS DnaJ domain signature 89 104 IPR001623 -
Lal17g0841 766 PRINTS DnaJ domain signature 105 125 IPR001623 -
Lal17g0841 766 PANTHER BNAC03G44070D PROTEIN 5 720 - -
Lal17g0841 766 CDD DnaJ 69 122 IPR001623 -
Lal17g0841 766 PANTHER HEAT SHOCK PROTEIN-LIKE 5 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0841 Lal-Chr17 6313154 6315454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0841 7 231 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.870 4.98e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0841 - - lang:109358929 1403.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0841 17 6313154 6315454 Lal4g0717 4 5867631 5870009 LSH