Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0824 ATGGGTTGCGTGTTCGGAAAGCAAGCCGATGAAGGCCGACAGCGCCGTCGCCGGAGTAGCAGCCAGCGAAGCTTTGTTTCTGATAACAATGGAGTCAGGGTAACTGAGCGGCAAGGGAATCGGCACACCGGCGATTTCCCAGTGAGTGTTCCCGCACCGGAGCGCCGGAAACCTAGACTCGATCCGTGTTCGGTAAATCAGCAAGGTTGGCCGTCGTGGTTGATGGCCGTTGCCGGTGATGCAATCGGCGATTGGACTCCTCGTCGCGCCAACACGTTCGAGAAGCTCGCGAAGATTGGACAAGGGACTTATAGTAATGTGTATAAGGCAAGGGATCTTATTACTGGAAAAATTGTGGCTTTGAAGAAAGTGAGATTTGATAATATGGAACCAGAGAGTGTGAAGTTCATGGCAAGAGAGATAATTGTTTTGAGGAAACTTGATCATCCCAATGTTATAAAGCTTGAAGGATTAGTTACTTCTAGAATGTCATGCAGTCTTTACTTGGTCTTTGAATATATGGAACATGATCTTGCAGGCCTTGCAGCTGGTCAAGGTGTTAAGTTCACTGAACCTCAGGTCAAATGCTTTATGAAGCAGTTACTATCTGGCCTTGAGCATTGCCACAGTCGAGGTGTATTGCACAGAGATATCAAGGGTTCCAATCTGCTTATTGACAATGACGGAATCCTTAAAATTGCAGATTTTGGACTGGCTACTTTCTTTGATCCAAAACAAAAGCAGTCCATGACAAGCAGAGTTGTGACCCTTTGGTATCGTTCCCCTGAACTTCTTCTTGGCGCTACATTTTATGGTGTTGGTATTGACCTTTGGAGTGCTGGTTGCATATTGGCTGAGCTGCTTTATGGAAAGCCAATCATGCCTGGCCGAACAGAGGTTGAACAACTGCACAAAATATTTAAGTTGTGTGGCTCTCCATCTGAGGAATATTGGAAGAAGTATAAACTACCAAATGCCACAATCTTTAAGCCACAGCAGCCATATAAACGTTGCATATCAGAAACATTCAAGGATGTTCCTCCATCCTCACTACCGCTAATTGAAAATCTTCTTGCTATAGATCCTGATGATCGTGGCACTGCCTCAGCTGCTCTAAATAATGGATTCTTTACCACTGAACCCTATGCTTGTGAACCATCGAGTTTACCGAAGTATCCTCCCAGCAAAGAATTGGATGTAAAACTGAGAGATGAAGAAGCAAGAAGGCAAAAATCTCTAAGTGGAAAAGCTCATGCAGTTGATAGTGGGAAGAGAGTCAGGGCACGTGAGCGCAGTCGGGCCATTCCAGCCCCTGAAGCCAATGCAGAGATCAAAACAAACTTAGATAGATGGAGAGTTGTGAACCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTCCACCTCCACATCAAGATGGAGCTGTTGGATATCCACAAGATGAATCACAAAAAGGACCTGTTTCATTTGGTGCCACTGACACTTCCTTTGGCTCAGAGATATTTAATTCCAACCCATCTGGGCATGTTAGAAGTCATGGTGCTGAAGGACCTTACAGAAGGAGGAAAACTAAAAATGAAGGCTCCAAAATGACCTCATCATGGAAATTTATGCACACACTCAAGGCATCAAAAATTGGCCTTTCAATGGATTTACTGTTTAAGACCAAATAA 1671 0.444 MGCVFGKQADEGRQRRRRSSSQRSFVSDNNGVRVTERQGNRHTGDFPVSVPAPERRKPRLDPCSVNQQGWPSWLMAVAGDAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNMEPESVKFMAREIIVLRKLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNDGILKIADFGLATFFDPKQKQSMTSRVVTLWYRSPELLLGATFYGVGIDLWSAGCILAELLYGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYKLPNATIFKPQQPYKRCISETFKDVPPSSLPLIENLLAIDPDDRGTASAALNNGFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKSLSGKAHAVDSGKRVRARERSRAIPAPEANAEIKTNLDRWRVVNHANAKSKSEKFPPPHQDGAVGYPQDESQKGPVSFGATDTSFGSEIFNSNPSGHVRSHGAEGPYRRRKTKNEGSKMTSSWKFMHTLKASKIGLSMDLLFKTK 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0824 556 MobiDBLite consensus disorder prediction 23 37 - -
Lal17g0824 556 ProSiteProfiles Protein kinase domain profile. 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0824 556 PANTHER CELL DIVISION PROTEIN KINASE 56 529 - -
Lal17g0824 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Lal17g0824 556 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 56 529 - -
Lal17g0824 556 MobiDBLite consensus disorder prediction 1 63 - -
Lal17g0824 556 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Lal17g0824 556 MobiDBLite consensus disorder prediction 406 436 - -
Lal17g0824 556 MobiDBLite consensus disorder prediction 406 441 - -
Lal17g0824 556 MobiDBLite consensus disorder prediction 458 531 - -
Lal17g0824 556 SMART serkin_6 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0824 556 MobiDBLite consensus disorder prediction 485 509 - -
Lal17g0824 556 Pfam Protein kinase domain 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0824 556 Gene3D Transferase(Phosphotransferase) domain 1 176 417 - -
Lal17g0824 556 CDD STKc_CDK9_like 93 377 - -
Lal17g0824 556 SUPERFAMILY Protein kinase-like (PK-like) 87 382 IPR011009 -
Lal17g0824 556 Gene3D Phosphorylase Kinase; domain 1 80 175 - -
Lal17g0824 556 MobiDBLite consensus disorder prediction 513 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0824 Lal-Chr17 6104954 6109623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0824 85 411 Core Cell Cycle Gene Families AT5G10270 51.143 1.55e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal17g0824 Pkinase 3.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0824 K08819 - gmx:100807756 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0824 17 6104954 6109623 Lal17g0824 17 6104954 6109623 ECH