Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0823 ATGGCTGCTTATTCATACCAATACCACCCTTTTCTTGTTGACTCATTACCATTTTTCTCCAATAACATAAACACTTTCTCTCCTCAGTTTAACCTTTATCAGGACAATAGCTGTGATGATCAAAGTTCCAAGATTACCATTAGTGACAATGAACCTTCTTCTGTGGCCAAAAACATTAGCCCTCAGTCCTCTATGGTAGTGGACAAGCTTGAAATTGGTGAACAGGTCACTCAGAAGGTGACTCTTATGGTGAAGAAGAGGAGAATCACAAGTGCATGTTCCTTGAATAAGTCTCAATCAAAGGATGTAAAAGAAGGGAAAAACAAGAGGCAGAGGAAGAAGAACAATGGTGAGATGAAAGAAGTTGAGAAGCCAAAAACAGAAAAGAAGGATCAGAAAAAAAGTTCTGAAGAGCCCCCAAAGGGCTATATCCATGTCAGAGCAAGAAGGGGTCAAGCAACTGATAGCCACAGCCTTGCTGAAAGGGTTAGAAGAGAGAAAATAAGTGAAAGGATGAAGATGTTGCAAAGACTTGTGCCAGGTTGTGATAAGGTGACTGGAAAAGCCCTTATGTTAGATGAAATAATCAATTATGTTCAATCTTTACAAAATCAAGTTGAGTTTTTGTCATTGAAGCTTGCTTCATCAAACCCCATGATTTATGACTTAGCAACGGACTCAGATACCCTCTTGGTTAGACCAGAGAAATTAAGTAGCATGCAATCACTATCCATGCAACAATTCAACAGCACCAATCAAGTCATAACCACTATGACCCCCACAACCATTTTTCCCACTCCTACTAATGACTATCTTTTGGACAATTCAGCTTCAATTTTTTTTCATAGGCAGAGGCCAAATTTCTTCTCTGAGGAAACCAGTACTCATATTTGGGATTCAGAAGAGCAACCACAAAAGTTTCTTCACCCATATGGATTCAGCAACAACTTTTGTTCCTATCATTAA 966 0.3903 MAAYSYQYHPFLVDSLPFFSNNINTFSPQFNLYQDNSCDDQSSKITISDNEPSSVAKNISPQSSMVVDKLEIGEQVTQKVTLMVKKRRITSACSLNKSQSKDVKEGKNKRQRKKNNGEMKEVEKPKTEKKDQKKSSEEPPKGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSLKLASSNPMIYDLATDSDTLLVRPEKLSSMQSLSMQQFNSTNQVITTMTPTTIFPTPTNDYLLDNSASIFFHRQRPNFFSEETSTHIWDSEEQPQKFLHPYGFSNNFCSYH 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0823 321 MobiDBLite consensus disorder prediction 93 160 - -
Lal17g0823 321 MobiDBLite consensus disorder prediction 100 160 - -
Lal17g0823 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 202 IPR011598 GO:0046983
Lal17g0823 321 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 321 - -
Lal17g0823 321 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 321 IPR024097 GO:0006355
Lal17g0823 321 Pfam Helix-loop-helix DNA-binding domain 156 203 IPR011598 GO:0046983
Lal17g0823 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 219 IPR036638 GO:0046983
Lal17g0823 321 Gene3D - 149 222 IPR036638 GO:0046983
Lal17g0823 321 CDD bHLH_AtBPE_like 142 226 - -
Lal17g0823 321 SMART finulus 158 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0823 Lal-Chr17 6072649 6076734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0823 90 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 55.026 6.86e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal17g0823 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0823 - - gmx:100806696 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0823 17 6072649 6076734 Lal17g0823 17 6072649 6076734 ECH