Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0818 ATGAAGGGAAATGGTGTTGTTGAGGGACAGAATAGTCATTTATCGTTATCCACAGTTAGAGATGCAGAAACTGCACTTTACAGGGAGCTATGGTATGCTTGTGCTGGTCCTCTTGTTACTGTTCCACGGGAAAGAGAACTTGTCTTCTATTTCCCTCAAGGCCATATTGAGCAGGTGGAGGCGTCAACCAATCAGGTTGCAGAGCAGCAAATGCCAGTTTATGATCTCCCTTCTAAGATTCTTTGTCGTGTAATCAACGTGCAGCTGAAGGCAGAGCCAGACACGGATGAGGTTTTTGCCCAAGTGACTTTACTTCCCGAGCCAAATCAAGATGAGAATGCTGTCGAGAAAGAGCCTCCACCACCTCCGCCACCACGATTCCACGTGCATTCATTTTGTAAGACACTGACTGCTTCTGATACCAGCACGCACGGAGGGTTTTCCGTGTTGAGACGGCATGCCGATGAATGTCTTCCTCCATTGGATATGACAAAGCAGCCACCCACTCAGGAATTGGTTGCTAAAGATTTGCATGGGATTGAGTGGCAATTTCGACATATCTTTCGCGGTCAACCCCGTAGACACTTGCTCCAAAGTGGTTGGAGTGTTTTTGTCAGCTCTAAGAGGCTAGTTGCTGGGGATGCATTTATATTTCTAAGAGGCGAGAATGGGGAACTTCGAGTTGGTGTCAGGCGAGCAATGAGACAGCAGGGTAATGTTCCGTCTTCCGTTATCTCTAGTCACAGCATGAATCTTGGTGTCCTTGCTACTGCTTGGCATGCTATCTCAACTGGGACCATGTTCACTGTTTATTACAAGCCCAGGACCAGTCCTGCTGAATTTCTTGTACCATACAATCAGTACATGGAATCTCTTAAAAATAGGTATACCATTGGGATGCGTTTTAGAATGAGGTTTGAAGGTGATGAGGCTCCAGAGCAGAGGTTTACTGGTACCGTTGTTGGAATAGAAGATTCTGACTCGAAAACGTGGCCAGATTCTAAATGGAGAAGCCTTAAGGTGAAATGGGATGAAACATCTAACATACCACGCCCTAATCGAGTTTCCCCATGGAAAATAGAGCCTACTCTTGCTCCTTCGCCTCTCAACCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGCAGTTCCATCATCTCCCAGTTCTTCTGTTCTTCCTCGAGAAGCATTATCTAAAGTTAGCTTACCTTTACAAACAAACGGATTCCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGGGAGGCAATTTTGAAGTTAGCAATGAGTTTGATACTGCTGAGAGGTCTGTTGGCCTGCAACCTTTAGTAGAAGATGAAAAGATTGATGTTTCTACTTTAAGAAGTCTTGGATCAGAGAACTGGATATCAATGGGGAGGCATGAGCCTGAATATTCAGATCTTCTTTCAGGATTTGGCACCAGTGGAGATCCCACCTATCAATCATTGGTTGATCAAATTTGTCATGTAGCTTATCCTGCAAGTAAGCATTCTTGGGATCACGAAGCTAAACTTCATGTGCATCATCCATGGCCTGTATTGCCCTCTAGTCTATCACTAAACATCCTGGACTCTAATTCTAAAGGCTCTGCACATGTTGATACAACTTACCAAGCTCGAGGGAATTTGAGGTGCGGTATATTTGGTGAAAACTTGATTCCACCCCCACCCCCAACTCAACATGAGAGTCTTACTTCAACAGAGCTTATGTCTAAGCCAGTGTCTTCGAATTCTAGTGAGGCTACGATACTTAAAGATGGTGACTGTAAGCTATTTGGCATCTCACTTATCAGTAGCGCCATTGCACCCAAGCATTCACTTCTACAAAGAAACACAACTAGTGATCTTGCTGGTCAAATGCATCTTACATCACACCAGCCACCATGTTCTGAAAATGATCAGATGTCTGAACACTCGAAGAACTCAAAACTTTCAGATGGTCCAGTTGTCATGGGTGATCATGAAAAGCCAAAACTTCTTCAAGGCAAACCATTCTGTGTTTCTGCTAGGAGTTGCACCAAAGTTCACAAGAAGGGTATTGCGCTTGGTAGATCAGTCGACCTTACAAAGTACTGTGATTACAATGGGTTAATTGCCGAATTGGATCGGCTGTTTGAATTTGGAGGTGAATTAATGTCACCAAACATAGACTGGCTTATTGTCTATACTGATAATGAGGGTGATATGATGCTTGTTGGTGATGATCCATGGCAGGAGTTCTGTGCCATGGTTCACAAAATATATATCTACCCTAAAGAGGAGATTCAGAAAATGAGCCCGGGGACCCTGAGTTCAAAAAGTGAAGATAATCATTCAGGTAGCGAATGTGCCGAAGCAAAAGAAGTTAAAAGCCATCTGAATCAGAAGATTTCATGTTCGAAAGTCGGGGACTACTGTCGTGAAGCCATCCAGTTGTAG 2445 0.4425 MKGNGVVEGQNSHLSLSTVRDAETALYRELWYACAGPLVTVPRERELVFYFPQGHIEQVEASTNQVAEQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGIEWQFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMNLGVLATAWHAISTGTMFTVYYKPRTSPAEFLVPYNQYMESLKNRYTIGMRFRMRFEGDEAPEQRFTGTVVGIEDSDSKTWPDSKWRSLKVKWDETSNIPRPNRVSPWKIEPTLAPSPLNPLPMPRPKRPRSNAVPSSPSSSVLPREALSKVSLPLQTNGFPRVLQGQEFSTLGGNFEVSNEFDTAERSVGLQPLVEDEKIDVSTLRSLGSENWISMGRHEPEYSDLLSGFGTSGDPTYQSLVDQICHVAYPASKHSWDHEAKLHVHHPWPVLPSSLSLNILDSNSKGSAHVDTTYQARGNLRCGIFGENLIPPPPPTQHESLTSTELMSKPVSSNSSEATILKDGDCKLFGISLISSAIAPKHSLLQRNTTSDLAGQMHLTSHQPPCSENDQMSEHSKNSKLSDGPVVMGDHEKPKLLQGKPFCVSARSCTKVHKKGIALGRSVDLTKYCDYNGLIAELDRLFEFGGELMSPNIDWLIVYTDNEGDMMLVGDDPWQEFCAMVHKIYIYPKEEIQKMSPGTLSSKSEDNHSGSECAEAKEVKSHLNQKISCSKVGDYCREAIQL 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0818 814 SUPERFAMILY DNA-binding pseudobarrel domain 128 261 IPR015300 -
Lal17g0818 814 Gene3D - 129 234 IPR015300 -
Lal17g0818 814 MobiDBLite consensus disorder prediction 629 644 - -
Lal17g0818 814 Pfam Auxin response factor 258 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal17g0818 814 MobiDBLite consensus disorder prediction 364 382 - -
Lal17g0818 814 ProSiteProfiles PB1 domain profile. 679 761 IPR000270 GO:0005515
Lal17g0818 814 MobiDBLite consensus disorder prediction 352 396 - -
Lal17g0818 814 Pfam AUX/IAA family 676 766 IPR033389 -
Lal17g0818 814 CDD B3_DNA 130 232 IPR003340 GO:0003677
Lal17g0818 814 Gene3D - 675 768 - -
Lal17g0818 814 Gene3D - 295 366 - -
Lal17g0818 814 SUPERFAMILY CAD & PB1 domains 680 756 - -
Lal17g0818 814 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Lal17g0818 814 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 786 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal17g0818 814 SMART B3_2 132 234 IPR003340 GO:0003677
Lal17g0818 814 PANTHER AUXIN RESPONSE FACTOR 2 16 786 - -
Lal17g0818 814 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Lal17g0818 814 MobiDBLite consensus disorder prediction 629 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0818 Lal-Chr17 6018799 6023878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0818 8 802 B3 DNA Binding Superfamily AT5G62000 61.290 0.0 989
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal17g0818 B3 1.4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0818 - - gmx:100803498 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0818 17 6018799 6023878 Lal17g0818 17 6018799 6023878 ECH
Lal17g0818 17 6018799 6023878 Lal4g0686 4 5384525 5389705 LSH
Lal14g1425 14 15492135 15497534 Lal17g0818 17 6018799 6023878 PCT
Lal7g0855 7 15115099 15119902 Lal17g0818 17 6018799 6023878 PCT
Lal19g1003 19 13905353 13910154 Lal17g0818 17 6018799 6023878 PCT
Lal17g0818 17 6018799 6023878 Lal14g1463 14 15706837 15708867 PCT
Lal17g0818 17 6018799 6023878 Lal7g0878 7 15325930 15333898 PCT
Lal17g0818 17 6018799 6023878 Lal19g1027 19 14115848 14117839 PCT