Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0817 ATGCTATACTACTATCGTAAACCAATGATCGGGTTACAAGGTGGCAATCAACCTTGTGCACAGAGGAATTTTGCCACTGAAAATAGTTCGGGGATTCTGAGTCGGTTGCTTTCTTCACAATATCATGGAGTTATTCTGGATGATAGATCTGTAGCGCGTCATACAGTGAACCTGTTGACATCAACAATCAAGATTGATGCTGAGCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCACCATCAAAGATGTATACTTTGCAGGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGAGTAATTGCCTCCTTGTTGAGTGCACAAATACTGGAAACGCCTCGATCAGTTGACTTGGAAGGCAATGAATTTTACTCTGCAAGCAAGTTTGAGTTGTTACTAAATTCATCACAAGATGATCCGGCATTGAGTGGGGATTTAGCATCCAAGATCTTCACCCCTAATAGTTCACCTTTACGCTCGCAAGGGAATAAACAAAATATGAAAGGAGAAAAGCCAATTGATGTTCTTAGAAAGGTTAGCGGCAATGACAAATGTGCTGATTGTGGTAAACCTGACCCAGACTGGGCATCCTTGAACCTTGGCATCCTTATATGTATTGAATGTTCGGGTGTTCATCGTAATCTTGGTGTACATATGTCGAAAGTAAGATCATTGACACTTGATGTGAAAGTCTGGGATTCCTCTGTCTTAACCATGTTTCAGTCACTGGGCAATCTCTTCGCAAACTCAGTTTGGGAGGAGCTTTTGCATTCAACGAGTAATTCGATTATGGATGACACAGCTGTGGGTTCTCCCAAGACCACCAGAAACAAGTTATTCCATGCAAGAAAACCAGAACATGATGATCCTATTTCACTAAAGGAGAGGTTCATTTATGCAAAGTACTCAGAGAAGGTCTTTGTTCGCCGGGTGACAAAAAACCATCGTCTACATTCAGTGGCGCAACATATGTGGGAAAGCATATGCGCAAACGACAAGAAAGCAATGTATCAGCATATTATCAGATCAGATGTAGATGTCAATGCTATCAATGGACAAGCATTAGATGGTGACTCTTTCATCACTACTACTTCAAGTAATTCAAATATATCATCTGAAAGTATACATCAATTAATGGAGGACATACAAGAGGGTTCTAGTGTGCTTCACCTAGCATGCCTAACTTGTGATGCTGCAATGGTGGAACTACTCCTACAGTGTGGAGCAGCTGTAAATGCTATTGACTCAAGAGGTAGGACACCACTACATTACTGCATATTGAGAGGGAAGATTGCAGCAGCAAAAGTGCTTATTACAAGGGGGGCTAATCCACATATGGTAGATAAAGAAGGCAATACTCCTCTTAAGCTTGCATCTGAACCATGCACTGTAGGCAATGAAGTTGATTCTCTCTTAACAAGCACTAGATAA 1446 0.4115 MLYYYRKPMIGLQGGNQPCAQRNFATENSSGILSRLLSSQYHGVILDDRSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKMYTLQAENALDQMDWMEKITGVIASLLSAQILETPRSVDLEGNEFYSASKFELLLNSSQDDPALSGDLASKIFTPNSSPLRSQGNKQNMKGEKPIDVLRKVSGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHMSKVRSLTLDVKVWDSSVLTMFQSLGNLFANSVWEELLHSTSNSIMDDTAVGSPKTTRNKLFHARKPEHDDPISLKERFIYAKYSEKVFVRRVTKNHRLHSVAQHMWESICANDKKAMYQHIIRSDVDVNAINGQALDGDSFITTTSSNSNISSESIHQLMEDIQEGSSVLHLACLTCDAAMVELLLQCGAAVNAIDSRGRTPLHYCILRGKIAAAKVLITRGANPHMVDKEGNTPLKLASEPCTVGNEVDSLLTSTR 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0817 481 Gene3D Arf GTPase activating protein 157 316 IPR038508 -
Lal17g0817 481 SUPERFAMILY PH domain-like 47 111 - -
Lal17g0817 481 ProSiteProfiles Ankyrin repeat region circular profile. 389 420 - -
Lal17g0817 481 SMART arf_gap_3 175 320 IPR001164 GO:0005096
Lal17g0817 481 CDD ArfGap 178 307 - -
Lal17g0817 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 479 - -
Lal17g0817 481 Gene3D - 317 468 IPR036770 -
Lal17g0817 481 SMART ANK_2a 422 451 IPR002110 GO:0005515
Lal17g0817 481 SMART ANK_2a 389 418 IPR002110 GO:0005515
Lal17g0817 481 ProSiteProfiles PH domain profile. 1 107 IPR001849 -
Lal17g0817 481 PANTHER CENTAURIN/ARF 1 479 IPR045258 GO:0005096
Lal17g0817 481 Gene3D - 1 118 IPR011993 -
Lal17g0817 481 Pfam Putative GTPase activating protein for Arf 178 314 IPR001164 GO:0005096
Lal17g0817 481 ProSiteProfiles ARF GTPase-activating proteins domain profile. 175 320 IPR001164 GO:0005096
Lal17g0817 481 Pfam Ankyrin repeats (many copies) 409 463 IPR002110 GO:0005515
Lal17g0817 481 PRINTS HIV Rev interacting protein signature 187 206 IPR001164 GO:0005096
Lal17g0817 481 PRINTS HIV Rev interacting protein signature 206 223 IPR001164 GO:0005096
Lal17g0817 481 PRINTS HIV Rev interacting protein signature 229 250 IPR001164 GO:0005096
Lal17g0817 481 ProSiteProfiles Ankyrin repeat region circular profile. 422 454 - -
Lal17g0817 481 ProSiteProfiles Ankyrin repeat profile. 389 421 IPR002110 GO:0005515
Lal17g0817 481 ProSiteProfiles Ankyrin repeat profile. 422 454 IPR002110 GO:0005515
Lal17g0817 481 SUPERFAMILY Ankyrin repeat 334 465 IPR036770 -
Lal17g0817 481 SUPERFAMILY ArfGap/RecO-like zinc finger 176 315 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0817 Lal-Chr17 5994251 6003753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0817 174 314 C2H2 Transcription Factor Family AT4G21160 38.732 1.23e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0817 K12489 - gmx:100797073 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0817 17 5994251 6003753 Lal17g0817 17 5994251 6003753 ECH
Lal17g0817 17 5994251 6003753 Lal21g0695 21 5504403 5515813 LSH
Lal19g1002 19 13879876 13890772 Lal17g0817 17 5994251 6003753 PCT
Lal17g0817 17 5994251 6003753 Lal19g1002 19 13879876 13890772 PCT