Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0813 ATGCCTTCTGACATAACGGAACAGCGGGCAGTTTCGGCCACATCCCGCTTTTGTGATGACATCTCCTTTCCTCCTGAGATGAATGTTGGATTACAGAAGCTAAAATCCAATCATGACAACTACCCACAAGGAAAGAGTGAAATGACAGCATCTCCTGGTGGCATTTTGAGTGCTTCGTCACCCTTTCAAATGAATGCGAAAACTGGCTTGCCATTGTCTCAGACTAGTCTATCTGGGGAAATTACCGAAAACCTGCATTTTGATGGAGAAGAAGGCATTACAGATGTGCTGAAGAGTACCCATGAACGACTTAATTATAACCTGAGATCATGGTCCGATGTGCATACCCAATCACCATCTGGTTCATATGGTTTAATTGGGAACAAGACTCTCACCAATGTGGCCTCTCGTGAAAGTGGCCTATTCTCGAGCTCACTGTCTGATATATTTAGCCAAAAGATGAGGTTATTGGGGAATGGTGTTCTGTCTGGTCAGCCAATTAATGTTGGTTCCCTTCCCGAGGAAGAACCGTATAAGTCTCTTGAGGAAATTGAAGCTGACACTATTGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTACTGACGAGCTAGGAGGCAGTTTACATGCTAGAACAAGTGACGATTTTGATGATTTCGATTTGTTCAGCAGCGGTGGAGGCATGGAGTTGGAAGGGGATGCACATCTAGTTTCAGAAAAAAGAACCAGTTACATGGGTGTTGATCTCGGTCACTATTTTAAAGGGAAAGTTCCTTTTGGTGAACAGTCTTCTAGAACACTTTTTGTCAGAAACATTAACAGCAACGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATACGGTGATATCCGGACCCTTTATACTGCCTGCAAGCATCGCGGGTTTGTCATGATTTCTTATTATGACGTTAGGGCTGCACAAAATGCAATGAAAGCACTCCAAAATAGGTCATTGAGGTCTAGGAATCTGGATATACATTATTCATTTCCGAAGGTCAATGCTACAGACAAGGATATTGGTCATGCCACACTGATGATATCTGGTCTTAATTCATCTGTTTTGAATGATGAACTGAAACATATTTTTGGGTTTTATGGAGAAATTAAAGACATTTTTGAATCTCCAGAAATGGACCATATCAAATTTATTGAGTTTTATGATGTACGAGCTGCAGAATCTTCTCTTCGGGAATTGAACAAGATCTGTATTGCTGGGAAGCAGATTAAGCTTGAACCTTGCCATCCTAGGATTGCAGCATGTCTCTTGCAGCAGTCTCAGAAAGGACAAGATGAACCAGATATTGGTCATAATCTTAACGACAGCTTATTAGCAAGACAGAAGGCAACATTGGCTTCTAGAGTAATGGCATCTGGTGGAAGCTTGGAAAATGGATACAATCAGGGATTTCAATCTGCAACACAGCTACCTTTGAATGCTTATATTGATAATAACACATTATTTCCTATGAATTCTAGCATTCACAAGACAGCAAGAGGAGCATCTGCTGGAAAATTATCTGGTGTTTGTGAGTCCAGTAATGCTGTTGATGCAATGAAATTTGCTTCGATTCCAAGATTCCATCCTCATTCTTTACCCGAGTATCATGGTGGTTTAGGTAATGGTAGTCCTTACAGCTTTTCAAGCACCATTAGCAACATGGCTCCCAATATTGGTACTGGGTCGACAGAAGTCTCTGGCAACAGGCACATTCAGGGATTGGGCTCAACTGGGAACCTAGCCGAATTTAATGCAGGAGGAAATGGGAGCCGCCCACATGGACTTTATCATATGTGGAACAGCTCCAACTTGCACCAGCAGCACCCATCAAATGCCATGCTTTGGAAGAATACACCATCCTTTGTTAATGGTGCTGGCGCCCCATGCATTCCACAGATGCCTAGCTTTCCCGGAACACCGCCTCATGTGCTGAGAGCAACACATGTAGACCACCATGTTGGCTCAGCACCAGTTGTTACAGCCTCGCCCTGGGAAACACAACGTTCTTACTTGGGAGAATCTCCTGAAGCTTCTGGTTTACGGTTGGGCTCTCTAGGAAGTCCAGGTTTTCCTGGTGCCTGGCAGTTGCATTATCCAGATTTTTCTCCTCGCAACATGTTTTCTCATGTTGGTGGGAATGGTGCCGAATTGATATCCAATGCTGGGCAGGGCTCTCCTAAGCAGCTGTCACATGTTTTCCCTGGGAGGCTTCCCATGACTTCAATGTCAAAATTTGATTCTACCAACGAACGAATGAGAAACCTCTATAATCGTAGAAGTGAAGCAAACACTAACAATGCTGACAAGAAACAATTTGAACTTGACCTAGGTCGCATACTGTGTGGGGAAGACAGCCGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACATCAAAGATGCTTCTTGCCGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGGCAAGTATTTTTGGGGGTTGGTTGATTGCTTCCTTAAATGAAGTAATCATAATTGTGTTTCTAAGTCACTTCTTTAAATGGTTGCAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGCTCAAATTATTCCATTCCACCAGGCTTTTCATGGAAAGAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCCGTTCTTGCATATGCCCGAATTCAAGGGAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGCTTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTTCCCTTGGGTAACAATATTAGACTGAGGACTGGAAAGTCTCGCGCTAGTGCTAGCGAGGAGAATCGCAGCCAAGGGAATCCTTTAACTTCGACAAGTGGAGAGGAGTCTGCTAATGGAATAGAGTCATCAAAAAACTCAGACTAA 2994 0.4282 MPSDITEQRAVSATSRFCDDISFPPEMNVGLQKLKSNHDNYPQGKSEMTASPGGILSASSPFQMNAKTGLPLSQTSLSGEITENLHFDGEEGITDVLKSTHERLNYNLRSWSDVHTQSPSGSYGLIGNKTLTNVASRESGLFSSSLSDIFSQKMRLLGNGVLSGQPINVGSLPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTDELGGSLHARTSDDFDDFDLFSSGGGMELEGDAHLVSEKRTSYMGVDLGHYFKGKVPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTLYTACKHRGFVMISYYDVRAAQNAMKALQNRSLRSRNLDIHYSFPKVNATDKDIGHATLMISGLNSSVLNDELKHIFGFYGEIKDIFESPEMDHIKFIEFYDVRAAESSLRELNKICIAGKQIKLEPCHPRIAACLLQQSQKGQDEPDIGHNLNDSLLARQKATLASRVMASGGSLENGYNQGFQSATQLPLNAYIDNNTLFPMNSSIHKTARGASAGKLSGVCESSNAVDAMKFASIPRFHPHSLPEYHGGLGNGSPYSFSSTISNMAPNIGTGSTEVSGNRHIQGLGSTGNLAEFNAGGNGSRPHGLYHMWNSSNLHQQHPSNAMLWKNTPSFVNGAGAPCIPQMPSFPGTPPHVLRATHVDHHVGSAPVVTASPWETQRSYLGESPEASGLRLGSLGSPGFPGAWQLHYPDFSPRNMFSHVGGNGAELISNAGQGSPKQLSHVFPGRLPMTSMSKFDSTNERMRNLYNRRSEANTNNADKKQFELDLGRILCGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKASIFGGWLIASLNEVIIIVFLSHFFKWLQNKCNVGYAFINMIDPAQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRLRTGKSRASASEENRSQGNPLTSTSGEESANGIESSKNSD 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0813 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 341 IPR000504 GO:0003723
Lal17g0813 997 Pfam RNA recognition motif 2 863 921 IPR007201 -
Lal17g0813 997 Pfam RNA recognition motif 2 796 854 IPR007201 -
Lal17g0813 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 426 IPR000504 GO:0003723
Lal17g0813 997 SUPERFAMILY RNA-binding domain, RBD 798 912 IPR035979 GO:0003676
Lal17g0813 997 Gene3D - 262 349 IPR012677 -
Lal17g0813 997 SUPERFAMILY RNA-binding domain, RBD 265 426 IPR035979 GO:0003676
Lal17g0813 997 CDD RRM3_MEI2_like 799 913 IPR034454 -
Lal17g0813 997 MobiDBLite consensus disorder prediction 936 997 - -
Lal17g0813 997 Gene3D - 350 444 IPR012677 -
Lal17g0813 997 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 856 - -
Lal17g0813 997 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 863 991 - -
Lal17g0813 997 SMART rrm1_1 354 422 IPR000504 GO:0003723
Lal17g0813 997 SMART rrm1_1 269 337 IPR000504 GO:0003723
Lal17g0813 997 MobiDBLite consensus disorder prediction 959 997 - -
Lal17g0813 997 PANTHER RNA RECOGNITION MOTIF-CONTAINING 863 991 - -
Lal17g0813 997 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 856 - -
Lal17g0813 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 334 IPR000504 GO:0003723
Lal17g0813 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 355 420 IPR000504 GO:0003723
Lal17g0813 997 CDD RRM1_MEI2_like 267 342 IPR034453 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0813 Lal-Chr17 5949438 5958082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0813 263 419 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 2.72e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0813 - - aprc:113865455 1455.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1422 14 15459404 15467516 Lal17g0813 17 5949438 5958082 ECH
Lal17g0813 17 5949438 5958082 Lal17g0813 17 5949438 5958082 ECH
Lal17g0813 17 5949438 5958082 Lal4g0683 4 5343667 5351907 LSH
Lal14g1422 14 15459404 15467516 Lal17g0813 17 5949438 5958082 PCT
Lal7g0852 7 15080848 15088933 Lal17g0813 17 5949438 5958082 PCT
Lal17g0813 17 5949438 5958082 Lal14g1422 14 15459404 15467516 PCT
Lal17g0813 17 5949438 5958082 Lal7g0852 7 15080848 15088933 PCT