Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0795 ATGTCGAGTTTCCACGTTGGTGGCAAAGTTGTGGACAGAGTCGATTTATTGAGGAAGAAGCAATGGCTTTGGCGCGTTGACATTACTCCTTTCGCTGTTCTCTTTGGCGCGTGGATCGTTGTGATTTGTCCTAGCCTTGATTTCGTTGATGCTTGTATTGTTTTAGGCGCTCTCGCTTCTCTTAACATTCTTGTTTTGCTATTTACCGGTTGGTCCGTTGATTTCAAGTGTTTCGCTCATTATAGCAAGGCTAAAAATATCGACCAGGCTGATTTTTGCAAGATAACTCCGGCGAAGTTCTGCGGTTCCAAAGAAGTTGTGCCGCTTCATTTTCGGAAAATACCTGCAGGTTCGTCATCAGCGGTGGATTTGGAAGAGATTTACTTCGAGTTTAGGAAACAATGTTTTGTCTATTCAAAGGAGAAGGGGACTTTTTGCAAACTTTCTTACCCTACCAAGGAAACATTTGGACATTATCTCAAGAGTAGTGGTCATGGCTCAGAAGCTAAAGTTCTTGCTGCTACTGAGAAATGGGGTCGGAATGTGTTTGATTATCCTCAGCCAACATTTCAGAAATTGATGAAAGAGCACTGCATGGAACCTTTTTTTGTGTTTCAGGTTTTCTGTGTGGGTCTCTGGTGTTTGGATGAATACTGGTATTACAGTTTGTTTACTCTGTTTATGTTGTTTATGTTTGAGTCGACCATGGCAAAAAGTCGGTTGAAGACCCTAACTGAGTTAAGACGTGTTAGAGTGGATAGTCAGATCCTAATGGTACATCGCTGTGGCAAGTGGGTAAAACTTTCTGGTACAGATCTTTTGCCTGGGGATGTTGTCTCTATAGGTCGCTCTTCTGGTCAGAATGGAGAGGAGAAGTCTGTACCTGCAGACATGCTTATATTGGCTGGAAGTGCAATTGTGAATGAAGCTATTCTGACAGGCGAGTCTACTCCTCAATGGAAGGTTTCGATCGTGGCTAGGGGCATTGAGGAGAAGTTGTCAGCAAAGCGAGATAAAAGCCATGTCTTATTTGGTGGAACTAAAATACTGCAGCACACTCCAGATAAGACCTTCCCTCTAAAAACGCCTGATGGTGGCTGTTTAGCTGTTGTCCTGAGGACAGGGTTTGAAACAAGTCAAGGAAAACTGATGCGAACAATCTTATTCTCTACAGAAAGGGTGACTGCTAATAGTTGGGAAAGTGGACTGTTCATTTTATTCTTGGTTGTATTTGCTCTAATCGCTGCTGGTTATGTGCTTGTTAAGGGGCTAGAAGATCCCACAAGGAGCAAGTATAAACTTATACTAAGTTGTTCACTTATTGTTACTTCTGTGATACCTCCTGAGTTACCAATGGAACTGTCAATAGCTGTTAATACTTCTCTGATTGCACTGGCTCGGCGGGGGATTTTTTGTACAGAACCTTTTCGAATACCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACTGGGACTCTTACATCTGATGACATGGAGTTTTCAGGAGTTGTTGATTTGACAGGAACAGCAGATTTAGAATCTGATATGAGTAGAGTGCCTGTGCGAACTGTAGAAATCCTGGCTTCTTGCCATGCATTGGTGTTTGTTGAGAATAAGCTGGTTGGTGATCCGCTTGAGAAGGCTGCGCTTAAGGGAATTGATTGGAGTTATAAATCTGATGAGAAGGCTGTTCCAAAAAAGGGAAATGGCAATCCTGTCCAAATTGTCCAGCGGTACCATTTTGCATCTCATTTGAAACGAATGGCGGCTGTTGTTCGCATTCAGGAGGAATTCTTTGCCTTTGTGAAGGGTGCCCCAGAAATTGTTCAAGACAGGCTCATTGATATACCACCATCATATGTTGAAACATACAAAAAACATACACGTCAGGGGTCTCGTGTTCTTGCTCTGGCTTACAAGTCTCTTCCTGATATGACTGTCAATGAAGCTAGAAGCTTGGATAGAGATTTAGTAGAGAGCAAACTTACTTTTGCTGGTTTTGTGGTATTCAATTGTCCTATCAGATCAGATTCAGCCACTGTTTTATCTGAATTGAAAGGATCCTCACATGACTTGGTGATGATTACTGGTGATCAAGCTTTGACAGCTTGCCATGTTGCTAGGCAAGTTCATATTATATCTAAACCTACGTTAATCCTGGGTCCAGCAAATAATGGTGAAGGATATACTTGGGTGTCCCCTGATGAGACTGAAAATATTCGCTACAGTGCGAAAGAGGTTGAGTCTTTATCCGAGACTCATGATCTGTGCGTTGGAGGTGATTGCTTTGAGATGTTGCAACAGACATCAGCTCATCTTCTGGTCATTCCTTATGTGAAGGTGTTTGCTAGAGTTGCTCCTGAGCAAAAAGAACTTATCATGACCACTTTCAAAACAGTGGGACGGATAACACTGATGTGTGGGGATGGAACCAATGATGTTGGAGCATTGAAGCAGGCTGACGTAGGAGTTGCTCTTCTGAATGCTTTGCCCCCAACTCAAAGTGGAAACTCATCTGGGGAAGAAGGTTCCAAATCTGTCAAGCCAAAGAAATCTAAACCTGCACCAGAAGCAACTGGAAAGACTGTTAGCCCAATTGGAGAAGGCACGTCAAACTCCAAGGTTGTTTCAAAATCAGGTTCTACCAACTCATCAGTTAACCGTCATCAAGCAGCGGTTGACATGCAACGAAAAAAGCTTAAGAAGATGATGGACGAGCTTAATGAGGAAGGAGATGGCCGTGCACCCCTTGTCAAGCTTGGTGATGCCTCAATGGCATCCCCATTCACCGCAAAGCATGCATCTGTTGCTCCCACCACTGACATTATTCGTCAAGGTCGCAGTACCCTAGTGACAACCCTCCAAATGTTTAAAATTCTGGGCCTCAACTGCCTTGCTACCGCATATGTGTTGAGTGTTATGTATCTGGATGGTGTCAAGCTAGGTGATGTGCAAGCCACAATAAGTGGTGTCTTCACTGCTTCCTTTTTCCTCTTCATCTCACATGCCCGCCCTCTTCCCACTCTTTCAGCCGAACGTCCCCACCCCAATATCTTCTGTGCTTATGTATTGCTTTCCCTCCTGGGACAATTTACCATTCACCTGCTTTTTCTTATTTCCTCTGTGAGAGAAGCTGAGAAATACATGCCAGATGAATGCGTTGAACCAGATGCAGATTTTCATCCCAACCTGGTGAATACTGTTTCGTACATGGTGAGCATGATGCTTCAGGTGGCCACCTTCGCTGTGAATTACATGGGCCACCCTTTCAACCAGAGTATTTCTGAAAACAAGCCGTTCCGATATGCGCTTGTTGCTGCTGTTATTTTCTTTACTGCGATTACATCTGATATCTTCAGGGACCTAAATGACTGGTTGAAGTTGGTGCCACTGCCAGTGGGATTAAGGGATAAACTCTTGCTTTGGGCGTTTCTAATGTTCTTGGTATGCTATTCATGGGAGAGACTGTTGAGGTGGGCGTTCCCGGGTAAGATCCCTTCTTGGCAGAAGCGACAACGGGTAGCTGTATCTAACTTAGAAAAGAAGAAACAGGTTTAA 3564 0.4369 MSSFHVGGKVVDRVDLLRKKQWLWRVDITPFAVLFGAWIVVICPSLDFVDACIVLGALASLNILVLLFTGWSVDFKCFAHYSKAKNIDQADFCKITPAKFCGSKEVVPLHFRKIPAGSSSAVDLEEIYFEFRKQCFVYSKEKGTFCKLSYPTKETFGHYLKSSGHGSEAKVLAATEKWGRNVFDYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRCGKWVKLSGTDLLPGDVVSIGRSSGQNGEEKSVPADMLILAGSAIVNEAILTGESTPQWKVSIVARGIEEKLSAKRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVLVKGLEDPTRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVDLTGTADLESDMSRVPVRTVEILASCHALVFVENKLVGDPLEKAALKGIDWSYKSDEKAVPKKGNGNPVQIVQRYHFASHLKRMAAVVRIQEEFFAFVKGAPEIVQDRLIDIPPSYVETYKKHTRQGSRVLALAYKSLPDMTVNEARSLDRDLVESKLTFAGFVVFNCPIRSDSATVLSELKGSSHDLVMITGDQALTACHVARQVHIISKPTLILGPANNGEGYTWVSPDETENIRYSAKEVESLSETHDLCVGGDCFEMLQQTSAHLLVIPYVKVFARVAPEQKELIMTTFKTVGRITLMCGDGTNDVGALKQADVGVALLNALPPTQSGNSSGEEGSKSVKPKKSKPAPEATGKTVSPIGEGTSNSKVVSKSGSTNSSVNRHQAAVDMQRKKLKKMMDELNEEGDGRAPLVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTASFFLFISHARPLPTLSAERPHPNIFCAYVLLSLLGQFTIHLLFLISSVREAEKYMPDECVEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENKPFRYALVAAVIFFTAITSDIFRDLNDWLKLVPLPVGLRDKLLLWAFLMFLVCYSWERLLRWAFPGKIPSWQKRQRVAVSNLEKKKQV 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0795 1187 Coils Coil 888 912 - -
Lal17g0795 1187 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Lal17g0795 1187 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Lal17g0795 1187 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Lal17g0795 1187 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Lal17g0795 1187 SUPERFAMILY Calcium ATPase, transmembrane domain M 164 1164 IPR023298 -
Lal17g0795 1187 MobiDBLite consensus disorder prediction 866 893 - -
Lal17g0795 1187 Gene3D - 226 388 - -
Lal17g0795 1187 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 1179 - -
Lal17g0795 1187 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Lal17g0795 1187 Gene3D - 483 668 IPR023299 GO:0000166
Lal17g0795 1187 PANTHER CATION-TRANSPORTING ATPASE 1 1179 - -
Lal17g0795 1187 Pfam E1-E2 ATPase 258 468 - -
Lal17g0795 1187 SFLD p-type atpase 469 950 IPR044492 -
Lal17g0795 1187 SUPERFAMILY Calcium ATPase, transduction domain A 255 387 IPR008250 -
Lal17g0795 1187 MobiDBLite consensus disorder prediction 833 895 - -
Lal17g0795 1187 CDD P-type_ATPase_cation 170 1102 - -
Lal17g0795 1187 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 39 1144 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
Lal17g0795 1187 Gene3D - 669 838 IPR023214 -
Lal17g0795 1187 SFLD C1.7: P-type atpase like 469 950 - -
Lal17g0795 1187 Pfam haloacid dehalogenase-like hydrolase 485 713 - -
Lal17g0795 1187 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 403 508 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g0795 1187 SUPERFAMILY HAD-like 483 834 IPR036412 -
Lal17g0795 1187 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Lal17g0795 1187 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0795 Lal-Chr17 5824336 5836658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0795 1 1187 Primary Pumps ATPases AT5G23630 77.162 0.0 1900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0795 K14950 - gmx:100789385 2134.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0795 17 5824336 5836658 Lal17g0795 17 5824336 5836658 ECH
Lal17g0795 17 5824336 5836658 Lal4g0662 4 5035759 5048927 LSH