Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0793 ATGGGTAGATCTCCTTGTTGTGAAAAAGAGCACACAAACAAAGGAGCTTGGACCAAAGAAGAAGATGAACGCCTCATTAAACACATCAAGATTCATGGTGAAGGTTGTTGGAGATCTCTTCCTAAAGTTGCTGGGTTGTTTAGATGTGGCAAGAGTTGTAGACTTAGATGGATAAATTACTTGAGACCTGATCTCAAGAGAGGAAACTTCACTGAAGCAGAAGATGAGCTTATTATTAATCTCCATAGCTTACTTGGAAACAAATGGTCTCTAATAGCTGCAAGGTTACCTGGAAGAACAGATAATGAGATCAAGAACTATTGGAATACTCACATCAAGAGAAAACTCTATAGCCGTGGAATCGACCCCCAAACTCATCGGTCACTCAACGCCACCGCCACCACCACCATGGTCACTACAAGCAACAAGAAAATGAACAACCACAACATTAGCAACATCAACCATGACATTAACAACAACAATTTAGAGTTGCTTAATGGTACTGAAGATTCAAATAGCAGCAGCGACGTTACGACAGAGGAATTAGCCTTTCATCCTCATAATCAACTCAACTTGGACCTTTCTATTGGCCTTCCTTCTAATCAGCCAAAACATTCTTCTTCAACCGTGAACCCAGAAAACAAAAGGAAGTTGAAACAAGAACCACAAGTTGTGTACCAGTGGTATAATGGTAACAACATTAATACTAGTCAACAACAACATGTGTGCCTTTGTTACGGTCTAGGGTTTCAAAGCAACAACCAAACATGTAGCTGCAAAACAATGGGAACTTCTACTACTACACTTACTGGTACAACTACTACCAATAATAATCTGTATAGAATTTACCAACCCATGAGTTTTTAG 867 0.3956 MGRSPCCEKEHTNKGAWTKEEDERLIKHIKIHGEGCWRSLPKVAGLFRCGKSCRLRWINYLRPDLKRGNFTEAEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRSLNATATTTMVTTSNKKMNNHNISNINHDINNNNLELLNGTEDSNSSSDVTTEELAFHPHNQLNLDLSIGLPSNQPKHSSSTVNPENKRKLKQEPQVVYQWYNGNNINTSQQQHVCLCYGLGFQSNNQTCSCKTMGTSTTTLTGTTTTNNNLYRIYQPMSF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0793 288 CDD SANT 69 112 IPR001005 -
Lal17g0793 288 CDD SANT 16 61 IPR001005 -
Lal17g0793 288 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal17g0793 288 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Lal17g0793 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal17g0793 288 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 228 - -
Lal17g0793 288 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal17g0793 288 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal17g0793 288 Gene3D - 68 159 - -
Lal17g0793 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal17g0793 288 Gene3D - 14 66 - -
Lal17g0793 288 MobiDBLite consensus disorder prediction 198 218 - -
Lal17g0793 288 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal17g0793 288 SMART sant 13 63 IPR001005 -
Lal17g0793 288 SMART sant 66 114 IPR001005 -
Lal17g0793 288 PANTHER TRANSCRIPTION FACTOR MYB7 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0793 Lal-Chr17 5805369 5806910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0793 1 200 MYB Transcription Factor Family AT4G09460 60.849 6.23e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal17g0793 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0793 K09422 - gmx:778033 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0793 17 5805369 5806910 Lal17g0793 17 5805369 5806910 ECH
Lal17g0793 17 5805369 5806910 Lal21g0682 21 5309627 5311383 LSH
Lal17g0793 17 5805369 5806910 Lal4g0660 4 5025379 5026935 LSH